Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11405

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11395 and A4249_RS11400 are separated by 16 nucleotidesA4249_RS11400 and A4249_RS11405 are separated by 167 nucleotidesA4249_RS11405 and A4249_RS11410 are separated by 99 nucleotidesA4249_RS11410 and A4249_RS11415 are separated by 160 nucleotides A4249_RS11395: A4249_RS11395 - hypothetical protein, at 2,295,219 to 2,295,416 _RS11395 A4249_RS11400: A4249_RS11400 - GNAT family N-acetyltransferase, at 2,295,433 to 2,295,966 _RS11400 A4249_RS11405: A4249_RS11405 - 50S ribosomal protein L27, at 2,296,134 to 2,296,421 _RS11405 A4249_RS11410: A4249_RS11410 - 50S ribosomal protein L21, at 2,296,521 to 2,297,075 _RS11410 A4249_RS11415: A4249_RS11415 - phosphoribosyltransferase family protein, at 2,297,236 to 2,297,769 _RS11415 Position (kb) 2296 2297Strain fitness (log2 ratio) -1 0 1at 2295.238 kb on + strandat 2295.238 kb on + strandat 2295.238 kb on + strandat 2295.238 kb on + strandat 2295.238 kb on + strandat 2295.238 kb on + strandat 2295.238 kb on + strandat 2295.239 kb on - strand, within A4249_RS11395at 2295.239 kb on - strand, within A4249_RS11395at 2295.239 kb on - strand, within A4249_RS11395at 2295.239 kb on - strand, within A4249_RS11395at 2295.239 kb on - strand, within A4249_RS11395at 2295.254 kb on + strand, within A4249_RS11395at 2295.254 kb on + strand, within A4249_RS11395at 2295.255 kb on - strand, within A4249_RS11395at 2295.255 kb on - strand, within A4249_RS11395at 2295.285 kb on + strand, within A4249_RS11395at 2295.390 kb on + strand, within A4249_RS11395at 2295.390 kb on + strand, within A4249_RS11395at 2295.391 kb on - strand, within A4249_RS11395at 2295.391 kb on - strand, within A4249_RS11395at 2295.391 kb on - strand, within A4249_RS11395at 2295.391 kb on - strand, within A4249_RS11395at 2295.513 kb on - strand, within A4249_RS11400at 2295.513 kb on - strand, within A4249_RS11400at 2295.656 kb on + strand, within A4249_RS11400at 2295.657 kb on - strand, within A4249_RS11400at 2295.657 kb on - strand, within A4249_RS11400at 2295.990 kb on + strandat 2295.990 kb on + strandat 2295.991 kb on - strandat 2295.991 kb on - strandat 2296.070 kb on + strandat 2296.070 kb on + strandat 2296.070 kb on + strandat 2296.071 kb on - strandat 2296.071 kb on - strandat 2296.135 kb on + strandat 2296.136 kb on - strandat 2296.136 kb on - strandat 2296.136 kb on - strandat 2296.523 kb on - strandat 2297.294 kb on + strand, within A4249_RS11415

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,295,238 + +0.1
2,295,238 + +0.7
2,295,238 + +0.3
2,295,238 + -0.7
2,295,238 + +0.2
2,295,238 + -0.8
2,295,238 + +0.3
2,295,239 - A4249_RS11395 0.10 +0.3
2,295,239 - A4249_RS11395 0.10 +0.5
2,295,239 - A4249_RS11395 0.10 +0.8
2,295,239 - A4249_RS11395 0.10 +0.5
2,295,239 - A4249_RS11395 0.10 -0.4
2,295,254 + A4249_RS11395 0.18 -0.3
2,295,254 + A4249_RS11395 0.18 +0.3
2,295,255 - A4249_RS11395 0.18 +0.8
2,295,255 - A4249_RS11395 0.18 -0.4
2,295,285 + A4249_RS11395 0.33 -0.4
2,295,390 + A4249_RS11395 0.86 -0.7
2,295,390 + A4249_RS11395 0.86 +0.4
2,295,391 - A4249_RS11395 0.87 -0.7
2,295,391 - A4249_RS11395 0.87 -0.3
2,295,391 - A4249_RS11395 0.87 +1.1
2,295,391 - A4249_RS11395 0.87 -0.1
2,295,513 - A4249_RS11400 0.15 -1.1
2,295,513 - A4249_RS11400 0.15 -1.0
2,295,656 + A4249_RS11400 0.42 +0.1
2,295,657 - A4249_RS11400 0.42 -0.2
2,295,657 - A4249_RS11400 0.42 +0.7
2,295,990 + -0.1
2,295,990 + +0.3
2,295,991 - -0.0
2,295,991 - +0.0
2,296,070 + -0.5
2,296,070 + +0.5
2,296,070 + +0.6
2,296,071 - -0.3
2,296,071 - +0.5
2,296,135 + +1.2
2,296,136 - +0.2
2,296,136 - -0.1
2,296,136 - +0.2
2,296,523 - -0.5
2,297,294 + A4249_RS11415 0.11 -0.1

Or see this region's nucleotide sequence