Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS11335 and A4249_RS11340 overlap by 4 nucleotides A4249_RS11340 and A4249_RS11345 overlap by 4 nucleotides A4249_RS11345 and A4249_RS11350 are separated by 18 nucleotides A4249_RS11350 and A4249_RS11355 are separated by 32 nucleotides A4249_RS11355 and A4249_RS11360 are separated by 4 nucleotides
A4249_RS11335: A4249_RS11335 - phosphoribosylanthranilate isomerase, at 2,285,656 to 2,286,294
_RS11335
A4249_RS11340: A4249_RS11340 - type II toxin-antitoxin system VapC family toxin, at 2,286,291 to 2,286,704
_RS11340
A4249_RS11345: A4249_RS11345 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 2,286,701 to 2,286,964
_RS11345
A4249_RS11350: A4249_RS11350 - pseudouridine synthase, at 2,286,983 to 2,287,717
_RS11350
A4249_RS11355: A4249_RS11355 - class I SAM-dependent methyltransferase, at 2,287,750 to 2,288,649
_RS11355
A4249_RS11360: A4249_RS11360 - undecaprenyl-diphosphate phosphatase, at 2,288,654 to 2,289,455
_RS11360
Position (kb)
2286
2287
2288 Strain fitness (log2 ratio)
-1
0
1 at 2286.338 kb on + strand, within A4249_RS11340 at 2286.338 kb on + strand, within A4249_RS11340 at 2286.339 kb on - strand, within A4249_RS11340 at 2286.339 kb on - strand, within A4249_RS11340 at 2286.339 kb on - strand, within A4249_RS11340 at 2286.339 kb on - strand, within A4249_RS11340 at 2286.387 kb on + strand, within A4249_RS11340 at 2286.387 kb on + strand, within A4249_RS11340 at 2286.387 kb on + strand, within A4249_RS11340 at 2286.387 kb on + strand, within A4249_RS11340 at 2286.387 kb on + strand, within A4249_RS11340 at 2286.388 kb on - strand, within A4249_RS11340 at 2286.388 kb on - strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.450 kb on + strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.451 kb on - strand, within A4249_RS11340 at 2286.453 kb on - strand, within A4249_RS11340 at 2286.462 kb on + strand, within A4249_RS11340 at 2286.654 kb on - strand, within A4249_RS11340 at 2286.694 kb on + strand at 2286.694 kb on + strand at 2286.695 kb on - strand at 2286.695 kb on - strand at 2286.695 kb on - strand at 2286.695 kb on - strand at 2286.695 kb on - strand at 2286.958 kb on + strand at 2287.134 kb on + strand, within A4249_RS11350 at 2287.443 kb on + strand, within A4249_RS11350 at 2287.443 kb on + strand, within A4249_RS11350 at 2287.443 kb on + strand, within A4249_RS11350 at 2287.443 kb on + strand, within A4249_RS11350 at 2287.444 kb on - strand, within A4249_RS11350 at 2287.665 kb on + strand at 2287.666 kb on - strand at 2287.775 kb on + strand at 2287.776 kb on - strand at 2287.776 kb on - strand at 2287.835 kb on + strand at 2287.835 kb on + strand at 2287.835 kb on + strand at 2287.835 kb on + strand at 2287.836 kb on - strand at 2288.040 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.513 kb on + strand, within A4249_RS11355 at 2288.513 kb on + strand, within A4249_RS11355 at 2288.513 kb on + strand, within A4249_RS11355 at 2288.514 kb on - strand, within A4249_RS11355 at 2288.514 kb on - strand, within A4249_RS11355 at 2288.514 kb on - strand, within A4249_RS11355 at 2288.514 kb on - strand, within A4249_RS11355 at 2288.514 kb on - strand, within A4249_RS11355 at 2288.633 kb on + strand at 2288.633 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 2,286,338 + A4249_RS11340 0.11 -0.8 2,286,338 + A4249_RS11340 0.11 +0.1 2,286,339 - A4249_RS11340 0.12 +0.0 2,286,339 - A4249_RS11340 0.12 +0.8 2,286,339 - A4249_RS11340 0.12 +0.7 2,286,339 - A4249_RS11340 0.12 -0.6 2,286,387 + A4249_RS11340 0.23 +0.4 2,286,387 + A4249_RS11340 0.23 +0.3 2,286,387 + A4249_RS11340 0.23 +0.4 2,286,387 + A4249_RS11340 0.23 -0.4 2,286,387 + A4249_RS11340 0.23 -0.6 2,286,388 - A4249_RS11340 0.23 +0.3 2,286,388 - A4249_RS11340 0.23 +0.4 2,286,450 + A4249_RS11340 0.38 +0.9 2,286,450 + A4249_RS11340 0.38 -0.2 2,286,450 + A4249_RS11340 0.38 -0.2 2,286,450 + A4249_RS11340 0.38 +1.1 2,286,450 + A4249_RS11340 0.38 -1.2 2,286,450 + A4249_RS11340 0.38 -0.2 2,286,450 + A4249_RS11340 0.38 -0.2 2,286,450 + A4249_RS11340 0.38 -0.0 2,286,450 + A4249_RS11340 0.38 +1.5 2,286,450 + A4249_RS11340 0.38 -0.6 2,286,451 - A4249_RS11340 0.39 -0.6 2,286,451 - A4249_RS11340 0.39 -0.5 2,286,451 - A4249_RS11340 0.39 -0.6 2,286,451 - A4249_RS11340 0.39 -1.0 2,286,451 - A4249_RS11340 0.39 -0.0 2,286,451 - A4249_RS11340 0.39 +0.7 2,286,451 - A4249_RS11340 0.39 -0.2 2,286,451 - A4249_RS11340 0.39 +0.7 2,286,451 - A4249_RS11340 0.39 +0.4 2,286,453 - A4249_RS11340 0.39 -0.3 2,286,462 + A4249_RS11340 0.41 +0.1 2,286,654 - A4249_RS11340 0.88 -0.1 2,286,694 + -0.3 2,286,694 + +0.3 2,286,695 - -0.3 2,286,695 - -0.3 2,286,695 - -0.1 2,286,695 - -0.7 2,286,695 - +0.2 2,286,958 + +0.3 2,287,134 + A4249_RS11350 0.21 -0.2 2,287,443 + A4249_RS11350 0.63 -0.6 2,287,443 + A4249_RS11350 0.63 -0.5 2,287,443 + A4249_RS11350 0.63 -0.3 2,287,443 + A4249_RS11350 0.63 +0.2 2,287,444 - A4249_RS11350 0.63 +0.4 2,287,665 + -1.2 2,287,666 - -0.1 2,287,775 + +0.5 2,287,776 - -0.2 2,287,776 - -0.5 2,287,835 + -0.3 2,287,835 + -0.1 2,287,835 + +0.2 2,287,835 + +0.0 2,287,836 - +0.0 2,288,040 + A4249_RS11355 0.32 +0.1 2,288,483 + A4249_RS11355 0.81 +0.8 2,288,483 + A4249_RS11355 0.81 -1.2 2,288,483 + A4249_RS11355 0.81 -0.1 2,288,483 + A4249_RS11355 0.81 +0.5 2,288,483 + A4249_RS11355 0.81 +0.8 2,288,483 + A4249_RS11355 0.81 +0.1 2,288,484 - A4249_RS11355 0.82 +0.8 2,288,484 - A4249_RS11355 0.82 -0.8 2,288,484 - A4249_RS11355 0.82 -0.1 2,288,484 - A4249_RS11355 0.82 +0.1 2,288,484 - A4249_RS11355 0.82 +1.0 2,288,484 - A4249_RS11355 0.82 -0.4 2,288,484 - A4249_RS11355 0.82 +0.5 2,288,484 - A4249_RS11355 0.82 +1.0 2,288,513 + A4249_RS11355 0.85 +0.5 2,288,513 + A4249_RS11355 0.85 +0.5 2,288,513 + A4249_RS11355 0.85 -0.5 2,288,514 - A4249_RS11355 0.85 -0.8 2,288,514 - A4249_RS11355 0.85 +0.0 2,288,514 - A4249_RS11355 0.85 -0.5 2,288,514 - A4249_RS11355 0.85 -0.2 2,288,514 - A4249_RS11355 0.85 -0.2 2,288,633 + +1.2 2,288,633 + +1.0
Or see this region's nucleotide sequence