Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11350

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS11335 and A4249_RS11340 overlap by 4 nucleotidesA4249_RS11340 and A4249_RS11345 overlap by 4 nucleotidesA4249_RS11345 and A4249_RS11350 are separated by 18 nucleotidesA4249_RS11350 and A4249_RS11355 are separated by 32 nucleotidesA4249_RS11355 and A4249_RS11360 are separated by 4 nucleotides A4249_RS11335: A4249_RS11335 - phosphoribosylanthranilate isomerase, at 2,285,656 to 2,286,294 _RS11335 A4249_RS11340: A4249_RS11340 - type II toxin-antitoxin system VapC family toxin, at 2,286,291 to 2,286,704 _RS11340 A4249_RS11345: A4249_RS11345 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 2,286,701 to 2,286,964 _RS11345 A4249_RS11350: A4249_RS11350 - pseudouridine synthase, at 2,286,983 to 2,287,717 _RS11350 A4249_RS11355: A4249_RS11355 - class I SAM-dependent methyltransferase, at 2,287,750 to 2,288,649 _RS11355 A4249_RS11360: A4249_RS11360 - undecaprenyl-diphosphate phosphatase, at 2,288,654 to 2,289,455 _RS11360 Position (kb) 2286 2287 2288Strain fitness (log2 ratio) -1 0 1at 2286.338 kb on + strand, within A4249_RS11340at 2286.338 kb on + strand, within A4249_RS11340at 2286.339 kb on - strand, within A4249_RS11340at 2286.339 kb on - strand, within A4249_RS11340at 2286.339 kb on - strand, within A4249_RS11340at 2286.339 kb on - strand, within A4249_RS11340at 2286.387 kb on + strand, within A4249_RS11340at 2286.387 kb on + strand, within A4249_RS11340at 2286.387 kb on + strand, within A4249_RS11340at 2286.387 kb on + strand, within A4249_RS11340at 2286.387 kb on + strand, within A4249_RS11340at 2286.388 kb on - strand, within A4249_RS11340at 2286.388 kb on - strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.450 kb on + strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.451 kb on - strand, within A4249_RS11340at 2286.453 kb on - strand, within A4249_RS11340at 2286.462 kb on + strand, within A4249_RS11340at 2286.654 kb on - strand, within A4249_RS11340at 2286.694 kb on + strandat 2286.694 kb on + strandat 2286.695 kb on - strandat 2286.695 kb on - strandat 2286.695 kb on - strandat 2286.695 kb on - strandat 2286.695 kb on - strandat 2286.958 kb on + strandat 2287.134 kb on + strand, within A4249_RS11350at 2287.443 kb on + strand, within A4249_RS11350at 2287.443 kb on + strand, within A4249_RS11350at 2287.443 kb on + strand, within A4249_RS11350at 2287.443 kb on + strand, within A4249_RS11350at 2287.444 kb on - strand, within A4249_RS11350at 2287.665 kb on + strandat 2287.666 kb on - strandat 2287.775 kb on + strandat 2287.776 kb on - strandat 2287.776 kb on - strandat 2287.835 kb on + strandat 2287.835 kb on + strandat 2287.835 kb on + strandat 2287.835 kb on + strandat 2287.836 kb on - strandat 2288.040 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.483 kb on + strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.484 kb on - strand, within A4249_RS11355at 2288.513 kb on + strand, within A4249_RS11355at 2288.513 kb on + strand, within A4249_RS11355at 2288.513 kb on + strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.514 kb on - strand, within A4249_RS11355at 2288.633 kb on + strandat 2288.633 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,286,338 + A4249_RS11340 0.11 -0.8
2,286,338 + A4249_RS11340 0.11 +0.1
2,286,339 - A4249_RS11340 0.12 +0.0
2,286,339 - A4249_RS11340 0.12 +0.8
2,286,339 - A4249_RS11340 0.12 +0.7
2,286,339 - A4249_RS11340 0.12 -0.6
2,286,387 + A4249_RS11340 0.23 +0.4
2,286,387 + A4249_RS11340 0.23 +0.3
2,286,387 + A4249_RS11340 0.23 +0.4
2,286,387 + A4249_RS11340 0.23 -0.4
2,286,387 + A4249_RS11340 0.23 -0.6
2,286,388 - A4249_RS11340 0.23 +0.3
2,286,388 - A4249_RS11340 0.23 +0.4
2,286,450 + A4249_RS11340 0.38 +0.9
2,286,450 + A4249_RS11340 0.38 -0.2
2,286,450 + A4249_RS11340 0.38 -0.2
2,286,450 + A4249_RS11340 0.38 +1.1
2,286,450 + A4249_RS11340 0.38 -1.2
2,286,450 + A4249_RS11340 0.38 -0.2
2,286,450 + A4249_RS11340 0.38 -0.2
2,286,450 + A4249_RS11340 0.38 -0.0
2,286,450 + A4249_RS11340 0.38 +1.5
2,286,450 + A4249_RS11340 0.38 -0.6
2,286,451 - A4249_RS11340 0.39 -0.6
2,286,451 - A4249_RS11340 0.39 -0.5
2,286,451 - A4249_RS11340 0.39 -0.6
2,286,451 - A4249_RS11340 0.39 -1.0
2,286,451 - A4249_RS11340 0.39 -0.0
2,286,451 - A4249_RS11340 0.39 +0.7
2,286,451 - A4249_RS11340 0.39 -0.2
2,286,451 - A4249_RS11340 0.39 +0.7
2,286,451 - A4249_RS11340 0.39 +0.4
2,286,453 - A4249_RS11340 0.39 -0.3
2,286,462 + A4249_RS11340 0.41 +0.1
2,286,654 - A4249_RS11340 0.88 -0.1
2,286,694 + -0.3
2,286,694 + +0.3
2,286,695 - -0.3
2,286,695 - -0.3
2,286,695 - -0.1
2,286,695 - -0.7
2,286,695 - +0.2
2,286,958 + +0.3
2,287,134 + A4249_RS11350 0.21 -0.2
2,287,443 + A4249_RS11350 0.63 -0.6
2,287,443 + A4249_RS11350 0.63 -0.5
2,287,443 + A4249_RS11350 0.63 -0.3
2,287,443 + A4249_RS11350 0.63 +0.2
2,287,444 - A4249_RS11350 0.63 +0.4
2,287,665 + -1.2
2,287,666 - -0.1
2,287,775 + +0.5
2,287,776 - -0.2
2,287,776 - -0.5
2,287,835 + -0.3
2,287,835 + -0.1
2,287,835 + +0.2
2,287,835 + +0.0
2,287,836 - +0.0
2,288,040 + A4249_RS11355 0.32 +0.1
2,288,483 + A4249_RS11355 0.81 +0.8
2,288,483 + A4249_RS11355 0.81 -1.2
2,288,483 + A4249_RS11355 0.81 -0.1
2,288,483 + A4249_RS11355 0.81 +0.5
2,288,483 + A4249_RS11355 0.81 +0.8
2,288,483 + A4249_RS11355 0.81 +0.1
2,288,484 - A4249_RS11355 0.82 +0.8
2,288,484 - A4249_RS11355 0.82 -0.8
2,288,484 - A4249_RS11355 0.82 -0.1
2,288,484 - A4249_RS11355 0.82 +0.1
2,288,484 - A4249_RS11355 0.82 +1.0
2,288,484 - A4249_RS11355 0.82 -0.4
2,288,484 - A4249_RS11355 0.82 +0.5
2,288,484 - A4249_RS11355 0.82 +1.0
2,288,513 + A4249_RS11355 0.85 +0.5
2,288,513 + A4249_RS11355 0.85 +0.5
2,288,513 + A4249_RS11355 0.85 -0.5
2,288,514 - A4249_RS11355 0.85 -0.8
2,288,514 - A4249_RS11355 0.85 +0.0
2,288,514 - A4249_RS11355 0.85 -0.5
2,288,514 - A4249_RS11355 0.85 -0.2
2,288,514 - A4249_RS11355 0.85 -0.2
2,288,633 + +1.2
2,288,633 + +1.0

Or see this region's nucleotide sequence