Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11310

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS11305 and A4249_RS11310 are separated by 36 nucleotidesA4249_RS11310 and A4249_RS11315 overlap by 46 nucleotidesA4249_RS11315 and A4249_RS11320 are separated by 10 nucleotides A4249_RS11305: A4249_RS11305 - bifunctional folylpolyglutamate synthase/dihydrofolate synthase, at 2,280,451 to 2,281,737 _RS11305 A4249_RS11310: A4249_RS11310 - DoxX family protein, at 2,281,774 to 2,282,217 _RS11310 A4249_RS11315: A4249_RS11315 - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,282,172 to 2,283,062 _RS11315 A4249_RS11320: A4249_RS11320 - tryptophan synthase subunit alpha, at 2,283,073 to 2,283,915 _RS11320 Position (kb) 2281 2282 2283Strain fitness (log2 ratio) -1 0 1at 2281.715 kb on - strandat 2281.715 kb on - strandat 2281.715 kb on - strandat 2281.715 kb on - strandat 2282.052 kb on + strand, within A4249_RS11310at 2282.052 kb on + strand, within A4249_RS11310at 2282.052 kb on + strand, within A4249_RS11310at 2282.053 kb on - strand, within A4249_RS11310at 2282.053 kb on - strand, within A4249_RS11310at 2282.053 kb on - strand, within A4249_RS11310at 2282.083 kb on + strand, within A4249_RS11310at 2282.083 kb on + strand, within A4249_RS11310at 2282.083 kb on + strand, within A4249_RS11310at 2282.084 kb on - strand, within A4249_RS11310at 2282.084 kb on - strand, within A4249_RS11310at 2282.084 kb on - strand, within A4249_RS11310at 2283.075 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
2,281,715 - +0.4
2,281,715 - -0.3
2,281,715 - -0.2
2,281,715 - -0.3
2,282,052 + A4249_RS11310 0.63 -0.9
2,282,052 + A4249_RS11310 0.63 -0.1
2,282,052 + A4249_RS11310 0.63 +0.1
2,282,053 - A4249_RS11310 0.63 +0.2
2,282,053 - A4249_RS11310 0.63 -0.2
2,282,053 - A4249_RS11310 0.63 -0.2
2,282,083 + A4249_RS11310 0.70 +0.3
2,282,083 + A4249_RS11310 0.70 +0.0
2,282,083 + A4249_RS11310 0.70 +0.9
2,282,084 - A4249_RS11310 0.70 +1.0
2,282,084 - A4249_RS11310 0.70 +0.4
2,282,084 - A4249_RS11310 0.70 +0.7
2,283,075 - -1.3

Or see this region's nucleotide sequence