Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10815

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10805 and A4249_RS10810 are separated by 135 nucleotidesA4249_RS10810 and A4249_RS10815 are separated by 84 nucleotidesA4249_RS10815 and A4249_RS10820 are separated by 108 nucleotidesA4249_RS10820 and A4249_RS10825 overlap by 4 nucleotides A4249_RS10805: A4249_RS10805 - ATP-binding protein, at 2,170,184 to 2,171,611 _RS10805 A4249_RS10810: A4249_RS10810 - response regulator transcription factor, at 2,171,747 to 2,172,418 _RS10810 A4249_RS10815: A4249_RS10815 - Do family serine endopeptidase, at 2,172,503 to 2,174,041 _RS10815 A4249_RS10820: A4249_RS10820 - cytochrome c-type biogenesis protein CcmH, at 2,174,150 to 2,174,656 _RS10820 A4249_RS10825: A4249_RS10825 - heme lyase CcmF/NrfE family subunit, at 2,174,653 to 2,176,641 _RS10825 Position (kb) 2172 2173 2174 2175Strain fitness (log2 ratio) -2 -1 0 1 2at 2171.511 kb on + strandat 2171.511 kb on + strandat 2171.511 kb on + strandat 2171.511 kb on + strandat 2171.511 kb on + strandat 2171.512 kb on - strandat 2171.512 kb on - strandat 2171.517 kb on + strandat 2171.517 kb on + strandat 2171.517 kb on + strandat 2171.517 kb on + strandat 2171.517 kb on + strandat 2171.517 kb on + strandat 2171.517 kb on + strandat 2171.517 kb on + strandat 2171.517 kb on + strandat 2171.518 kb on - strandat 2171.518 kb on - strandat 2171.518 kb on - strandat 2171.518 kb on - strandat 2171.518 kb on - strandat 2171.518 kb on - strandat 2171.518 kb on - strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.613 kb on + strandat 2171.614 kb on - strandat 2171.614 kb on - strandat 2171.614 kb on - strandat 2171.614 kb on - strandat 2171.614 kb on - strandat 2171.614 kb on - strandat 2171.614 kb on - strandat 2171.614 kb on - strandat 2171.614 kb on - strandat 2171.614 kb on - strandat 2171.854 kb on + strand, within A4249_RS10810at 2171.855 kb on - strand, within A4249_RS10810at 2171.855 kb on - strand, within A4249_RS10810at 2171.855 kb on - strand, within A4249_RS10810at 2171.855 kb on - strand, within A4249_RS10810at 2171.875 kb on - strand, within A4249_RS10810at 2172.111 kb on + strand, within A4249_RS10810at 2172.111 kb on + strand, within A4249_RS10810at 2172.111 kb on + strand, within A4249_RS10810at 2172.111 kb on + strand, within A4249_RS10810at 2172.112 kb on - strand, within A4249_RS10810at 2172.127 kb on - strand, within A4249_RS10810at 2172.127 kb on - strand, within A4249_RS10810at 2172.127 kb on - strand, within A4249_RS10810at 2172.221 kb on + strand, within A4249_RS10810at 2172.221 kb on + strand, within A4249_RS10810at 2172.221 kb on + strand, within A4249_RS10810at 2172.222 kb on - strand, within A4249_RS10810at 2172.276 kb on + strand, within A4249_RS10810at 2172.276 kb on + strand, within A4249_RS10810at 2172.276 kb on + strand, within A4249_RS10810at 2172.276 kb on + strand, within A4249_RS10810at 2172.276 kb on + strand, within A4249_RS10810at 2172.276 kb on + strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.277 kb on - strand, within A4249_RS10810at 2172.285 kb on + strand, within A4249_RS10810at 2172.455 kb on + strandat 2172.455 kb on + strandat 2172.481 kb on + strandat 2172.481 kb on + strandat 2172.482 kb on - strandat 2172.482 kb on - strandat 2172.482 kb on - strandat 2172.482 kb on - strandat 2173.269 kb on + strand, within A4249_RS10815at 2173.269 kb on + strand, within A4249_RS10815at 2173.269 kb on + strand, within A4249_RS10815at 2173.269 kb on + strand, within A4249_RS10815at 2173.269 kb on + strand, within A4249_RS10815at 2173.270 kb on - strand, within A4249_RS10815at 2173.270 kb on - strand, within A4249_RS10815at 2173.270 kb on - strand, within A4249_RS10815at 2173.362 kb on + strand, within A4249_RS10815at 2173.363 kb on - strand, within A4249_RS10815at 2173.363 kb on - strand, within A4249_RS10815at 2173.371 kb on + strand, within A4249_RS10815at 2173.372 kb on - strand, within A4249_RS10815at 2173.372 kb on - strand, within A4249_RS10815at 2173.472 kb on + strand, within A4249_RS10815at 2173.506 kb on + strand, within A4249_RS10815at 2173.506 kb on + strand, within A4249_RS10815at 2173.507 kb on - strand, within A4249_RS10815at 2173.507 kb on - strand, within A4249_RS10815at 2173.507 kb on - strand, within A4249_RS10815at 2174.098 kb on + strandat 2174.098 kb on + strandat 2174.098 kb on + strandat 2174.098 kb on + strandat 2174.098 kb on + strandat 2174.099 kb on - strandat 2174.100 kb on + strandat 2174.100 kb on + strandat 2174.100 kb on + strandat 2174.100 kb on + strandat 2174.101 kb on - strandat 2174.151 kb on + strandat 2174.152 kb on - strandat 2174.207 kb on + strand, within A4249_RS10820at 2174.207 kb on + strand, within A4249_RS10820at 2174.208 kb on - strand, within A4249_RS10820at 2174.208 kb on - strand, within A4249_RS10820at 2174.642 kb on + strandat 2174.642 kb on + strandat 2174.642 kb on + strandat 2174.642 kb on + strandat 2174.642 kb on + strandat 2174.643 kb on - strandat 2174.837 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,171,511 + -0.0
2,171,511 + +0.3
2,171,511 + +0.7
2,171,511 + -0.7
2,171,511 + +0.2
2,171,512 - -0.3
2,171,512 - +0.0
2,171,517 + -0.2
2,171,517 + -0.1
2,171,517 + +0.5
2,171,517 + -0.4
2,171,517 + -0.0
2,171,517 + -0.2
2,171,517 + +0.1
2,171,517 + -0.0
2,171,517 + -0.6
2,171,518 - +0.2
2,171,518 - +0.7
2,171,518 - -0.1
2,171,518 - +0.7
2,171,518 - -0.5
2,171,518 - -1.4
2,171,518 - -0.4
2,171,613 + -0.0
2,171,613 + -0.5
2,171,613 + +0.2
2,171,613 + -0.6
2,171,613 + -0.8
2,171,613 + -0.1
2,171,613 + -0.4
2,171,613 + -0.1
2,171,613 + -0.7
2,171,613 + -0.2
2,171,613 + +0.1
2,171,613 + -0.1
2,171,613 + +0.5
2,171,614 - -0.3
2,171,614 - +0.1
2,171,614 - -1.0
2,171,614 - +0.4
2,171,614 - +2.1
2,171,614 - -0.5
2,171,614 - -0.8
2,171,614 - -0.7
2,171,614 - +0.3
2,171,614 - +1.2
2,171,854 + A4249_RS10810 0.16 -0.2
2,171,855 - A4249_RS10810 0.16 -0.1
2,171,855 - A4249_RS10810 0.16 +0.3
2,171,855 - A4249_RS10810 0.16 -0.3
2,171,855 - A4249_RS10810 0.16 +0.1
2,171,875 - A4249_RS10810 0.19 -0.2
2,172,111 + A4249_RS10810 0.54 -0.1
2,172,111 + A4249_RS10810 0.54 -0.5
2,172,111 + A4249_RS10810 0.54 -0.4
2,172,111 + A4249_RS10810 0.54 -0.1
2,172,112 - A4249_RS10810 0.54 -0.8
2,172,127 - A4249_RS10810 0.57 +0.1
2,172,127 - A4249_RS10810 0.57 -0.7
2,172,127 - A4249_RS10810 0.57 -0.3
2,172,221 + A4249_RS10810 0.71 -0.1
2,172,221 + A4249_RS10810 0.71 +0.4
2,172,221 + A4249_RS10810 0.71 -0.2
2,172,222 - A4249_RS10810 0.71 -0.2
2,172,276 + A4249_RS10810 0.79 +0.3
2,172,276 + A4249_RS10810 0.79 -0.7
2,172,276 + A4249_RS10810 0.79 +0.7
2,172,276 + A4249_RS10810 0.79 -0.3
2,172,276 + A4249_RS10810 0.79 -0.2
2,172,276 + A4249_RS10810 0.79 -0.1
2,172,277 - A4249_RS10810 0.79 +0.3
2,172,277 - A4249_RS10810 0.79 -0.2
2,172,277 - A4249_RS10810 0.79 -1.0
2,172,277 - A4249_RS10810 0.79 -0.5
2,172,277 - A4249_RS10810 0.79 +0.0
2,172,277 - A4249_RS10810 0.79 -0.1
2,172,277 - A4249_RS10810 0.79 +0.1
2,172,277 - A4249_RS10810 0.79 +0.0
2,172,277 - A4249_RS10810 0.79 -0.7
2,172,277 - A4249_RS10810 0.79 +0.2
2,172,277 - A4249_RS10810 0.79 -0.2
2,172,277 - A4249_RS10810 0.79 +0.2
2,172,277 - A4249_RS10810 0.79 -0.4
2,172,277 - A4249_RS10810 0.79 +0.1
2,172,285 + A4249_RS10810 0.80 +0.6
2,172,455 + -0.1
2,172,455 + +0.1
2,172,481 + -0.5
2,172,481 + -0.9
2,172,482 - +0.1
2,172,482 - +0.1
2,172,482 - +0.3
2,172,482 - +0.6
2,173,269 + A4249_RS10815 0.50 -0.9
2,173,269 + A4249_RS10815 0.50 +0.7
2,173,269 + A4249_RS10815 0.50 +1.7
2,173,269 + A4249_RS10815 0.50 -1.8
2,173,269 + A4249_RS10815 0.50 +0.7
2,173,270 - A4249_RS10815 0.50 +0.4
2,173,270 - A4249_RS10815 0.50 -1.3
2,173,270 - A4249_RS10815 0.50 +2.2
2,173,362 + A4249_RS10815 0.56 -1.5
2,173,363 - A4249_RS10815 0.56 -0.2
2,173,363 - A4249_RS10815 0.56 -0.9
2,173,371 + A4249_RS10815 0.56 +0.1
2,173,372 - A4249_RS10815 0.56 -1.3
2,173,372 - A4249_RS10815 0.56 -0.2
2,173,472 + A4249_RS10815 0.63 +1.3
2,173,506 + A4249_RS10815 0.65 +2.5
2,173,506 + A4249_RS10815 0.65 -0.8
2,173,507 - A4249_RS10815 0.65 +1.7
2,173,507 - A4249_RS10815 0.65 +0.7
2,173,507 - A4249_RS10815 0.65 +2.0
2,174,098 + -0.3
2,174,098 + -2.3
2,174,098 + +0.4
2,174,098 + -0.3
2,174,098 + +0.2
2,174,099 - -0.8
2,174,100 + -0.9
2,174,100 + -0.0
2,174,100 + +0.6
2,174,100 + -0.8
2,174,101 - -0.8
2,174,151 + -0.3
2,174,152 - -0.2
2,174,207 + A4249_RS10820 0.11 +0.5
2,174,207 + A4249_RS10820 0.11 +0.3
2,174,208 - A4249_RS10820 0.11 -0.4
2,174,208 - A4249_RS10820 0.11 -0.8
2,174,642 + +0.3
2,174,642 + -0.4
2,174,642 + -0.3
2,174,642 + +0.0
2,174,642 + +0.2
2,174,643 - -0.3
2,174,837 + +1.7

Or see this region's nucleotide sequence