Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10590

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10580 and A4249_RS10585 are separated by 34 nucleotidesA4249_RS10585 and A4249_RS10590 are separated by 56 nucleotidesA4249_RS10590 and A4249_RS10595 are separated by 49 nucleotides A4249_RS10580: A4249_RS10580 - DNA ligase D, at 2,124,273 to 2,126,834 _RS10580 A4249_RS10585: A4249_RS10585 - extensin family protein, at 2,126,869 to 2,127,612 _RS10585 A4249_RS10590: A4249_RS10590 - DUF2256 domain-containing protein, at 2,127,669 to 2,127,848 _RS10590 A4249_RS10595: A4249_RS10595 - RNA polymerase sigma factor RpoD, at 2,127,898 to 2,129,844 _RS10595 Position (kb) 2127 2128Strain fitness (log2 ratio) -2 -1 0 1at 2126.698 kb on + strandat 2126.698 kb on + strandat 2126.698 kb on + strandat 2126.699 kb on - strandat 2126.699 kb on - strandat 2126.699 kb on - strandat 2126.699 kb on - strandat 2126.699 kb on - strandat 2126.699 kb on - strandat 2126.735 kb on - strandat 2126.735 kb on - strandat 2126.812 kb on + strandat 2126.812 kb on + strandat 2126.812 kb on + strandat 2126.812 kb on + strandat 2126.812 kb on + strandat 2126.812 kb on + strandat 2126.812 kb on + strandat 2126.812 kb on + strandat 2126.813 kb on - strandat 2126.813 kb on - strandat 2126.813 kb on - strandat 2126.813 kb on - strandat 2126.813 kb on - strandat 2126.813 kb on - strandat 2126.813 kb on - strandat 2126.834 kb on + strandat 2126.834 kb on + strandat 2126.835 kb on - strandat 2126.842 kb on + strandat 2126.842 kb on + strandat 2126.842 kb on + strandat 2126.843 kb on - strandat 2126.843 kb on - strandat 2126.930 kb on + strandat 2126.931 kb on - strandat 2126.931 kb on - strandat 2126.931 kb on - strandat 2126.979 kb on + strand, within A4249_RS10585at 2126.980 kb on - strand, within A4249_RS10585at 2127.144 kb on - strand, within A4249_RS10585at 2127.414 kb on + strand, within A4249_RS10585at 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.625 kb on + strandat 2127.626 kb on - strandat 2127.626 kb on - strandat 2127.626 kb on - strandat 2127.671 kb on - strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.896 kb on + strandat 2127.897 kb on - strandat 2127.897 kb on - strandat 2127.897 kb on - strandat 2127.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,126,698 + +0.3
2,126,698 + +0.7
2,126,698 + -0.2
2,126,699 - +0.5
2,126,699 - +0.3
2,126,699 - +0.4
2,126,699 - -0.1
2,126,699 - +0.7
2,126,699 - -0.1
2,126,735 - -1.3
2,126,735 - +0.7
2,126,812 + +0.2
2,126,812 + -0.4
2,126,812 + +0.7
2,126,812 + -0.5
2,126,812 + +0.4
2,126,812 + -0.1
2,126,812 + +0.2
2,126,812 + -2.0
2,126,813 - -0.5
2,126,813 - -0.5
2,126,813 - -0.3
2,126,813 - +0.6
2,126,813 - -0.8
2,126,813 - -0.4
2,126,813 - -1.0
2,126,834 + -0.3
2,126,834 + +0.2
2,126,835 - +0.3
2,126,842 + -0.1
2,126,842 + -0.1
2,126,842 + -0.1
2,126,843 - -0.1
2,126,843 - +0.5
2,126,930 + -0.2
2,126,931 - +1.0
2,126,931 - -0.2
2,126,931 - +0.2
2,126,979 + A4249_RS10585 0.15 +0.2
2,126,980 - A4249_RS10585 0.15 +0.1
2,127,144 - A4249_RS10585 0.37 +0.1
2,127,414 + A4249_RS10585 0.73 -0.3
2,127,625 + +0.3
2,127,625 + -0.2
2,127,625 + +1.1
2,127,625 + -1.2
2,127,625 + -1.2
2,127,625 + +0.3
2,127,625 + -0.8
2,127,626 - +0.2
2,127,626 - +0.3
2,127,626 - +0.1
2,127,671 - -0.4
2,127,896 + -0.5
2,127,896 + -1.8
2,127,896 + +0.7
2,127,896 + +0.7
2,127,896 + +0.3
2,127,896 + -1.3
2,127,896 + -0.1
2,127,897 - -0.2
2,127,897 - +0.3
2,127,897 - +0.4
2,127,897 - -0.2

Or see this region's nucleotide sequence