Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10065

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10060 and A4249_RS10065 are separated by 230 nucleotidesA4249_RS10065 and A4249_RS10070 are separated by 47 nucleotidesA4249_RS10070 and A4249_RS10075 are separated by 107 nucleotides A4249_RS10060: A4249_RS10060 - RluA family pseudouridine synthase, at 2,020,019 to 2,021,038 _RS10060 A4249_RS10065: A4249_RS10065 - RNA polymerase sigma factor RpoH, at 2,021,269 to 2,022,156 _RS10065 A4249_RS10070: A4249_RS10070 - response regulator, at 2,022,204 to 2,023,016 _RS10070 A4249_RS10075: A4249_RS10075 - adenylosuccinate synthase, at 2,023,124 to 2,024,419 _RS10075 Position (kb) 2021 2022 2023Strain fitness (log2 ratio) -2 -1 0 1 2at 2020.333 kb on + strand, within A4249_RS10060at 2020.334 kb on - strand, within A4249_RS10060at 2020.334 kb on - strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.577 kb on + strand, within A4249_RS10060at 2020.578 kb on - strand, within A4249_RS10060at 2020.578 kb on - strand, within A4249_RS10060at 2020.578 kb on - strand, within A4249_RS10060at 2020.578 kb on - strand, within A4249_RS10060at 2020.578 kb on - strand, within A4249_RS10060at 2020.578 kb on - strand, within A4249_RS10060at 2020.578 kb on - strand, within A4249_RS10060at 2020.578 kb on - strand, within A4249_RS10060at 2020.578 kb on - strand, within A4249_RS10060at 2020.706 kb on + strand, within A4249_RS10060at 2020.706 kb on + strand, within A4249_RS10060at 2020.706 kb on + strand, within A4249_RS10060at 2020.706 kb on + strand, within A4249_RS10060at 2020.706 kb on + strand, within A4249_RS10060at 2020.707 kb on - strand, within A4249_RS10060at 2020.707 kb on - strand, within A4249_RS10060at 2020.707 kb on - strand, within A4249_RS10060at 2020.707 kb on - strand, within A4249_RS10060at 2020.856 kb on + strand, within A4249_RS10060at 2020.856 kb on + strand, within A4249_RS10060at 2020.857 kb on - strand, within A4249_RS10060at 2020.857 kb on - strand, within A4249_RS10060at 2020.997 kb on + strandat 2020.997 kb on + strandat 2021.052 kb on + strandat 2021.052 kb on + strandat 2021.053 kb on - strandat 2021.086 kb on - strandat 2021.087 kb on + strandat 2021.090 kb on - strandat 2021.090 kb on - strandat 2021.090 kb on - strandat 2021.090 kb on - strandat 2021.177 kb on + strandat 2021.177 kb on + strandat 2021.177 kb on + strandat 2021.178 kb on - strandat 2021.178 kb on - strandat 2021.178 kb on - strandat 2021.266 kb on + strandat 2021.268 kb on + strandat 2021.280 kb on + strandat 2021.280 kb on + strandat 2021.280 kb on + strandat 2022.159 kb on + strandat 2022.160 kb on - strandat 2022.199 kb on + strandat 2022.199 kb on + strandat 2022.199 kb on + strandat 2022.199 kb on + strandat 2022.199 kb on + strandat 2022.199 kb on + strandat 2022.199 kb on + strandat 2022.200 kb on - strandat 2022.200 kb on - strandat 2022.313 kb on + strand, within A4249_RS10070at 2022.313 kb on + strand, within A4249_RS10070at 2022.313 kb on + strand, within A4249_RS10070at 2022.313 kb on + strand, within A4249_RS10070at 2022.313 kb on + strand, within A4249_RS10070at 2022.313 kb on + strand, within A4249_RS10070at 2022.313 kb on + strand, within A4249_RS10070at 2022.313 kb on + strand, within A4249_RS10070at 2022.314 kb on - strand, within A4249_RS10070at 2022.314 kb on - strand, within A4249_RS10070at 2022.314 kb on - strand, within A4249_RS10070at 2022.314 kb on - strand, within A4249_RS10070at 2022.314 kb on - strand, within A4249_RS10070at 2022.314 kb on - strand, within A4249_RS10070at 2022.314 kb on - strand, within A4249_RS10070at 2022.314 kb on - strand, within A4249_RS10070at 2022.314 kb on - strand, within A4249_RS10070at 2022.314 kb on - strand, within A4249_RS10070at 2022.535 kb on + strand, within A4249_RS10070at 2022.535 kb on + strand, within A4249_RS10070at 2022.535 kb on + strand, within A4249_RS10070at 2022.536 kb on - strand, within A4249_RS10070at 2022.536 kb on - strand, within A4249_RS10070at 2022.574 kb on + strand, within A4249_RS10070at 2022.574 kb on + strand, within A4249_RS10070at 2022.575 kb on - strand, within A4249_RS10070at 2022.855 kb on + strand, within A4249_RS10070at 2022.856 kb on - strand, within A4249_RS10070at 2022.883 kb on + strand, within A4249_RS10070at 2022.884 kb on - strand, within A4249_RS10070at 2022.884 kb on - strand, within A4249_RS10070at 2022.884 kb on - strand, within A4249_RS10070at 2022.884 kb on - strand, within A4249_RS10070at 2022.990 kb on + strandat 2022.990 kb on + strandat 2022.990 kb on + strandat 2022.991 kb on - strandat 2023.061 kb on + strandat 2023.062 kb on - strandat 2023.075 kb on + strandat 2023.075 kb on + strandat 2023.075 kb on + strandat 2023.076 kb on - strandat 2023.076 kb on - strandat 2023.076 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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2,020,333 + A4249_RS10060 0.31 -0.0
2,020,334 - A4249_RS10060 0.31 +0.2
2,020,334 - A4249_RS10060 0.31 +1.3
2,020,577 + A4249_RS10060 0.55 -0.9
2,020,577 + A4249_RS10060 0.55 +0.7
2,020,577 + A4249_RS10060 0.55 +0.5
2,020,577 + A4249_RS10060 0.55 +0.1
2,020,577 + A4249_RS10060 0.55 -1.1
2,020,577 + A4249_RS10060 0.55 +0.1
2,020,577 + A4249_RS10060 0.55 -0.9
2,020,577 + A4249_RS10060 0.55 +0.1
2,020,577 + A4249_RS10060 0.55 -0.9
2,020,577 + A4249_RS10060 0.55 -0.1
2,020,577 + A4249_RS10060 0.55 -0.2
2,020,577 + A4249_RS10060 0.55 +0.4
2,020,578 - A4249_RS10060 0.55 -0.1
2,020,578 - A4249_RS10060 0.55 -1.5
2,020,578 - A4249_RS10060 0.55 +0.3
2,020,578 - A4249_RS10060 0.55 -0.3
2,020,578 - A4249_RS10060 0.55 -0.3
2,020,578 - A4249_RS10060 0.55 +0.1
2,020,578 - A4249_RS10060 0.55 -0.3
2,020,578 - A4249_RS10060 0.55 +0.4
2,020,578 - A4249_RS10060 0.55 -0.1
2,020,706 + A4249_RS10060 0.67 +0.3
2,020,706 + A4249_RS10060 0.67 +0.4
2,020,706 + A4249_RS10060 0.67 +1.9
2,020,706 + A4249_RS10060 0.67 -1.5
2,020,706 + A4249_RS10060 0.67 -0.9
2,020,707 - A4249_RS10060 0.67 +0.0
2,020,707 - A4249_RS10060 0.67 -0.0
2,020,707 - A4249_RS10060 0.67 +0.8
2,020,707 - A4249_RS10060 0.67 -0.0
2,020,856 + A4249_RS10060 0.82 -0.2
2,020,856 + A4249_RS10060 0.82 +2.3
2,020,857 - A4249_RS10060 0.82 -0.1
2,020,857 - A4249_RS10060 0.82 -1.9
2,020,997 + -0.7
2,020,997 + -0.2
2,021,052 + +0.4
2,021,052 + +0.2
2,021,053 - -0.2
2,021,086 - -0.0
2,021,087 + -0.1
2,021,090 - +0.9
2,021,090 - +1.1
2,021,090 - -0.1
2,021,090 - +1.5
2,021,177 + +1.4
2,021,177 + -0.0
2,021,177 + -0.0
2,021,178 - -0.0
2,021,178 - +0.7
2,021,178 - +0.5
2,021,266 + +0.2
2,021,268 + +1.9
2,021,280 + -0.7
2,021,280 + +0.7
2,021,280 + +0.9
2,022,159 + -0.5
2,022,160 - -0.2
2,022,199 + -0.1
2,022,199 + -0.2
2,022,199 + -2.2
2,022,199 + +0.6
2,022,199 + -0.2
2,022,199 + -0.3
2,022,199 + -0.4
2,022,200 - +0.3
2,022,200 - +0.7
2,022,313 + A4249_RS10070 0.13 +0.1
2,022,313 + A4249_RS10070 0.13 -0.1
2,022,313 + A4249_RS10070 0.13 -0.8
2,022,313 + A4249_RS10070 0.13 +0.6
2,022,313 + A4249_RS10070 0.13 -0.3
2,022,313 + A4249_RS10070 0.13 -0.7
2,022,313 + A4249_RS10070 0.13 -0.3
2,022,313 + A4249_RS10070 0.13 -0.2
2,022,314 - A4249_RS10070 0.14 -0.7
2,022,314 - A4249_RS10070 0.14 -1.2
2,022,314 - A4249_RS10070 0.14 +1.4
2,022,314 - A4249_RS10070 0.14 +1.0
2,022,314 - A4249_RS10070 0.14 +0.1
2,022,314 - A4249_RS10070 0.14 -0.3
2,022,314 - A4249_RS10070 0.14 -1.2
2,022,314 - A4249_RS10070 0.14 -0.0
2,022,314 - A4249_RS10070 0.14 -0.4
2,022,314 - A4249_RS10070 0.14 +0.1
2,022,535 + A4249_RS10070 0.41 +0.1
2,022,535 + A4249_RS10070 0.41 +0.7
2,022,535 + A4249_RS10070 0.41 +0.6
2,022,536 - A4249_RS10070 0.41 -1.0
2,022,536 - A4249_RS10070 0.41 -0.0
2,022,574 + A4249_RS10070 0.46 -0.3
2,022,574 + A4249_RS10070 0.46 +0.1
2,022,575 - A4249_RS10070 0.46 -1.5
2,022,855 + A4249_RS10070 0.80 -0.3
2,022,856 - A4249_RS10070 0.80 +0.4
2,022,883 + A4249_RS10070 0.84 -0.7
2,022,884 - A4249_RS10070 0.84 -0.5
2,022,884 - A4249_RS10070 0.84 +0.3
2,022,884 - A4249_RS10070 0.84 +0.2
2,022,884 - A4249_RS10070 0.84 -0.1
2,022,990 + -1.5
2,022,990 + -0.2
2,022,990 + -1.0
2,022,991 - -0.1
2,023,061 + -0.5
2,023,062 - +0.8
2,023,075 + +0.2
2,023,075 + -0.6
2,023,075 + +0.4
2,023,076 - -0.2
2,023,076 - +0.2
2,023,076 - -0.4

Or see this region's nucleotide sequence