Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09885

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09880 and A4249_RS09885 are separated by 240 nucleotidesA4249_RS09885 and A4249_RS09890 are separated by 13 nucleotidesA4249_RS09890 and A4249_RS09895 overlap by 13 nucleotides A4249_RS09880: A4249_RS09880 - TonB-dependent receptor, at 1,968,221 to 1,971,487 _RS09880 A4249_RS09885: A4249_RS09885 - cell division protein FtsA, at 1,971,728 to 1,973,062 _RS09885 A4249_RS09890: A4249_RS09890 - FtsQ-type POTRA domain-containing protein, at 1,973,076 to 1,973,963 _RS09890 A4249_RS09895: A4249_RS09895 - D-alanine--D-alanine ligase, at 1,973,951 to 1,974,892 _RS09895 Position (kb) 1971 1972 1973 1974Strain fitness (log2 ratio) -3 -2 -1 0 1at 1970.820 kb on + strand, within A4249_RS09880at 1970.820 kb on + strand, within A4249_RS09880at 1970.820 kb on + strand, within A4249_RS09880at 1970.820 kb on + strand, within A4249_RS09880at 1970.821 kb on - strand, within A4249_RS09880at 1970.821 kb on - strand, within A4249_RS09880at 1970.821 kb on - strand, within A4249_RS09880at 1970.821 kb on - strand, within A4249_RS09880at 1970.821 kb on - strand, within A4249_RS09880at 1970.835 kb on + strand, within A4249_RS09880at 1970.835 kb on + strand, within A4249_RS09880at 1970.836 kb on - strand, within A4249_RS09880at 1970.836 kb on - strand, within A4249_RS09880at 1970.836 kb on - strand, within A4249_RS09880at 1970.836 kb on - strand, within A4249_RS09880at 1970.836 kb on - strand, within A4249_RS09880at 1970.881 kb on - strand, within A4249_RS09880at 1971.000 kb on + strand, within A4249_RS09880at 1971.000 kb on + strand, within A4249_RS09880at 1971.000 kb on + strand, within A4249_RS09880at 1971.001 kb on - strand, within A4249_RS09880at 1971.001 kb on - strand, within A4249_RS09880at 1971.001 kb on - strand, within A4249_RS09880at 1971.001 kb on - strand, within A4249_RS09880at 1971.131 kb on - strand, within A4249_RS09880at 1971.246 kb on + strandat 1971.247 kb on - strandat 1971.337 kb on + strandat 1971.373 kb on + strandat 1971.468 kb on + strandat 1971.468 kb on + strandat 1971.468 kb on + strandat 1971.472 kb on + strandat 1971.487 kb on + strandat 1971.488 kb on - strandat 1971.503 kb on + strandat 1971.551 kb on + strandat 1971.551 kb on + strandat 1971.552 kb on - strandat 1971.552 kb on - strandat 1971.560 kb on + strandat 1971.568 kb on + strandat 1971.568 kb on + strandat 1971.568 kb on + strandat 1971.568 kb on + strandat 1971.568 kb on + strandat 1971.568 kb on + strandat 1971.568 kb on + strandat 1971.568 kb on + strandat 1971.568 kb on + strandat 1971.568 kb on + strandat 1971.569 kb on - strandat 1971.624 kb on + strandat 1971.624 kb on + strandat 1971.625 kb on - strandat 1971.625 kb on - strandat 1971.625 kb on - strandat 1971.660 kb on + strandat 1971.660 kb on + strandat 1971.660 kb on + strandat 1971.675 kb on + strandat 1971.675 kb on + strandat 1971.675 kb on + strandat 1971.675 kb on + strandat 1971.676 kb on - strandat 1971.719 kb on + strandat 1971.720 kb on - strandat 1971.720 kb on - strandat 1973.069 kb on - strandat 1973.078 kb on - strandat 1973.078 kb on - strandat 1973.078 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,970,820 + A4249_RS09880 0.80 +0.4
1,970,820 + A4249_RS09880 0.80 +0.2
1,970,820 + A4249_RS09880 0.80 -2.4
1,970,820 + A4249_RS09880 0.80 -2.9
1,970,821 - A4249_RS09880 0.80 -1.1
1,970,821 - A4249_RS09880 0.80 -0.2
1,970,821 - A4249_RS09880 0.80 +0.1
1,970,821 - A4249_RS09880 0.80 -0.1
1,970,821 - A4249_RS09880 0.80 -0.8
1,970,835 + A4249_RS09880 0.80 -0.0
1,970,835 + A4249_RS09880 0.80 +0.1
1,970,836 - A4249_RS09880 0.80 -0.7
1,970,836 - A4249_RS09880 0.80 -0.6
1,970,836 - A4249_RS09880 0.80 -0.0
1,970,836 - A4249_RS09880 0.80 -0.4
1,970,836 - A4249_RS09880 0.80 -0.1
1,970,881 - A4249_RS09880 0.81 -0.8
1,971,000 + A4249_RS09880 0.85 +0.2
1,971,000 + A4249_RS09880 0.85 -0.5
1,971,000 + A4249_RS09880 0.85 -0.5
1,971,001 - A4249_RS09880 0.85 -0.2
1,971,001 - A4249_RS09880 0.85 -0.2
1,971,001 - A4249_RS09880 0.85 +0.6
1,971,001 - A4249_RS09880 0.85 -0.1
1,971,131 - A4249_RS09880 0.89 +1.0
1,971,246 + +0.0
1,971,247 - -0.9
1,971,337 + -0.3
1,971,373 + +0.0
1,971,468 + -1.1
1,971,468 + -0.3
1,971,468 + -0.3
1,971,472 + -0.3
1,971,487 + -0.3
1,971,488 - -0.4
1,971,503 + +0.7
1,971,551 + -1.8
1,971,551 + -0.8
1,971,552 - +0.3
1,971,552 - +0.4
1,971,560 + -1.3
1,971,568 + +0.5
1,971,568 + -0.2
1,971,568 + -0.2
1,971,568 + -1.1
1,971,568 + +0.4
1,971,568 + -0.3
1,971,568 + +0.2
1,971,568 + -0.8
1,971,568 + -1.2
1,971,568 + +1.0
1,971,569 - +0.1
1,971,624 + -0.4
1,971,624 + +0.2
1,971,625 - -0.1
1,971,625 - +0.5
1,971,625 - -0.5
1,971,660 + -0.6
1,971,660 + -0.6
1,971,660 + +0.3
1,971,675 + -0.5
1,971,675 + -0.2
1,971,675 + -0.2
1,971,675 + +0.9
1,971,676 - +0.1
1,971,719 + -0.3
1,971,720 - -0.3
1,971,720 - -0.3
1,973,069 - +0.4
1,973,078 - -0.7
1,973,078 - -1.3
1,973,078 - +0.4

Or see this region's nucleotide sequence