Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09780

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09770 and A4249_RS09775 overlap by 1 nucleotidesA4249_RS09775 and A4249_RS09780 are separated by 1 nucleotidesA4249_RS09780 and A4249_RS09785 overlap by 1 nucleotides A4249_RS09770: A4249_RS09770 - flagellar motor switch protein FliN, at 1,947,792 to 1,948,124 _RS09770 A4249_RS09775: A4249_RS09775 - flagellar assembly protein FlbE, at 1,948,124 to 1,948,786 _RS09775 A4249_RS09780: A4249_RS09780 - flagellar motor switch protein FliG, at 1,948,788 to 1,949,822 _RS09780 A4249_RS09785: A4249_RS09785 - flagellar basal-body MS-ring/collar protein FliF, at 1,949,822 to 1,951,462 _RS09785 Position (kb) 1948 1949 1950Strain fitness (log2 ratio) -2 -1 0 1at 1948.343 kb on + strand, within A4249_RS09775at 1948.499 kb on + strand, within A4249_RS09775at 1948.500 kb on - strand, within A4249_RS09775at 1948.500 kb on - strand, within A4249_RS09775at 1948.577 kb on - strand, within A4249_RS09775at 1948.680 kb on + strand, within A4249_RS09775at 1948.680 kb on + strand, within A4249_RS09775at 1948.680 kb on + strand, within A4249_RS09775at 1948.680 kb on + strand, within A4249_RS09775at 1948.680 kb on + strand, within A4249_RS09775at 1948.680 kb on + strand, within A4249_RS09775at 1948.681 kb on - strand, within A4249_RS09775at 1948.681 kb on - strand, within A4249_RS09775at 1948.681 kb on - strand, within A4249_RS09775at 1948.681 kb on - strand, within A4249_RS09775at 1948.681 kb on - strand, within A4249_RS09775at 1948.792 kb on + strandat 1948.792 kb on + strandat 1948.792 kb on + strandat 1948.792 kb on + strandat 1948.793 kb on - strandat 1948.793 kb on - strandat 1948.793 kb on - strandat 1948.793 kb on - strandat 1949.417 kb on - strand, within A4249_RS09780at 1949.431 kb on + strand, within A4249_RS09780at 1949.432 kb on - strand, within A4249_RS09780at 1949.432 kb on - strand, within A4249_RS09780at 1949.432 kb on - strand, within A4249_RS09780at 1949.432 kb on - strand, within A4249_RS09780at 1949.432 kb on - strand, within A4249_RS09780at 1949.432 kb on - strand, within A4249_RS09780at 1949.569 kb on + strand, within A4249_RS09780at 1949.569 kb on + strand, within A4249_RS09780at 1949.569 kb on + strand, within A4249_RS09780at 1949.569 kb on + strand, within A4249_RS09780at 1949.569 kb on + strand, within A4249_RS09780at 1949.570 kb on - strand, within A4249_RS09780at 1949.570 kb on - strand, within A4249_RS09780at 1949.570 kb on - strand, within A4249_RS09780at 1949.570 kb on - strand, within A4249_RS09780at 1949.570 kb on - strand, within A4249_RS09780at 1949.570 kb on - strand, within A4249_RS09780at 1950.348 kb on + strand, within A4249_RS09785at 1950.348 kb on + strand, within A4249_RS09785at 1950.348 kb on + strand, within A4249_RS09785at 1950.348 kb on + strand, within A4249_RS09785at 1950.348 kb on + strand, within A4249_RS09785at 1950.348 kb on + strand, within A4249_RS09785at 1950.349 kb on - strand, within A4249_RS09785at 1950.349 kb on - strand, within A4249_RS09785at 1950.349 kb on - strand, within A4249_RS09785at 1950.472 kb on - strand, within A4249_RS09785at 1950.472 kb on - strand, within A4249_RS09785

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,948,343 + A4249_RS09775 0.33 -0.1
1,948,499 + A4249_RS09775 0.57 -0.1
1,948,500 - A4249_RS09775 0.57 -1.0
1,948,500 - A4249_RS09775 0.57 -0.5
1,948,577 - A4249_RS09775 0.68 +0.1
1,948,680 + A4249_RS09775 0.84 -0.9
1,948,680 + A4249_RS09775 0.84 -1.5
1,948,680 + A4249_RS09775 0.84 +0.7
1,948,680 + A4249_RS09775 0.84 -0.1
1,948,680 + A4249_RS09775 0.84 -0.1
1,948,680 + A4249_RS09775 0.84 -1.7
1,948,681 - A4249_RS09775 0.84 +0.1
1,948,681 - A4249_RS09775 0.84 +1.1
1,948,681 - A4249_RS09775 0.84 +0.2
1,948,681 - A4249_RS09775 0.84 +0.3
1,948,681 - A4249_RS09775 0.84 +0.4
1,948,792 + -0.0
1,948,792 + +0.3
1,948,792 + -0.5
1,948,792 + +0.2
1,948,793 - +0.7
1,948,793 - +0.3
1,948,793 - +1.2
1,948,793 - -0.3
1,949,417 - A4249_RS09780 0.61 -0.3
1,949,431 + A4249_RS09780 0.62 -0.0
1,949,432 - A4249_RS09780 0.62 -0.1
1,949,432 - A4249_RS09780 0.62 -0.1
1,949,432 - A4249_RS09780 0.62 -0.0
1,949,432 - A4249_RS09780 0.62 +0.5
1,949,432 - A4249_RS09780 0.62 +0.9
1,949,432 - A4249_RS09780 0.62 -0.8
1,949,569 + A4249_RS09780 0.75 +0.1
1,949,569 + A4249_RS09780 0.75 -0.2
1,949,569 + A4249_RS09780 0.75 +0.5
1,949,569 + A4249_RS09780 0.75 +0.1
1,949,569 + A4249_RS09780 0.75 +0.0
1,949,570 - A4249_RS09780 0.76 +0.1
1,949,570 - A4249_RS09780 0.76 +1.5
1,949,570 - A4249_RS09780 0.76 +0.3
1,949,570 - A4249_RS09780 0.76 -0.3
1,949,570 - A4249_RS09780 0.76 -0.1
1,949,570 - A4249_RS09780 0.76 +1.2
1,950,348 + A4249_RS09785 0.32 +0.0
1,950,348 + A4249_RS09785 0.32 +0.4
1,950,348 + A4249_RS09785 0.32 -1.9
1,950,348 + A4249_RS09785 0.32 +0.4
1,950,348 + A4249_RS09785 0.32 +0.1
1,950,348 + A4249_RS09785 0.32 +0.3
1,950,349 - A4249_RS09785 0.32 +0.3
1,950,349 - A4249_RS09785 0.32 +1.1
1,950,349 - A4249_RS09785 0.32 -1.2
1,950,472 - A4249_RS09785 0.40 +0.2
1,950,472 - A4249_RS09785 0.40 -0.6

Or see this region's nucleotide sequence