Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09505

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09500 and A4249_RS09505 are separated by 424 nucleotidesA4249_RS09505 and A4249_RS09510 are separated by 52 nucleotidesA4249_RS09510 and A4249_RS09515 are separated by 7 nucleotidesA4249_RS09515 and A4249_RS09520 are separated by 62 nucleotides A4249_RS09500: A4249_RS09500 - 3-oxoacyl-ACP reductase, at 1,897,642 to 1,898,400 _RS09500 A4249_RS09505: A4249_RS09505 - DNA-3-methyladenine glycosylase I, at 1,898,825 to 1,899,433 _RS09505 A4249_RS09510: A4249_RS09510 - ribonuclease HII, at 1,899,486 to 1,900,067 _RS09510 A4249_RS09515: A4249_RS09515 - hypothetical protein, at 1,900,075 to 1,900,353 _RS09515 A4249_RS09520: A4249_RS09520 - DNA adenine methylase, at 1,900,416 to 1,901,453 _RS09520 Position (kb) 1898 1899 1900Strain fitness (log2 ratio) -1 0 1 2at 1897.915 kb on + strand, within A4249_RS09500at 1897.915 kb on + strand, within A4249_RS09500at 1897.916 kb on - strand, within A4249_RS09500at 1897.916 kb on - strand, within A4249_RS09500at 1897.916 kb on - strand, within A4249_RS09500at 1897.916 kb on - strand, within A4249_RS09500at 1897.916 kb on - strand, within A4249_RS09500at 1898.104 kb on + strand, within A4249_RS09500at 1898.105 kb on - strand, within A4249_RS09500at 1898.105 kb on - strand, within A4249_RS09500at 1898.113 kb on + strand, within A4249_RS09500at 1898.113 kb on + strand, within A4249_RS09500at 1898.113 kb on + strand, within A4249_RS09500at 1898.113 kb on + strand, within A4249_RS09500at 1898.114 kb on - strand, within A4249_RS09500at 1898.114 kb on - strand, within A4249_RS09500at 1898.114 kb on - strand, within A4249_RS09500at 1898.114 kb on - strand, within A4249_RS09500at 1898.114 kb on - strand, within A4249_RS09500at 1898.580 kb on + strandat 1898.581 kb on - strandat 1898.662 kb on + strandat 1898.663 kb on - strandat 1898.667 kb on + strandat 1898.667 kb on + strandat 1898.667 kb on + strandat 1898.668 kb on - strandat 1898.668 kb on - strandat 1898.731 kb on + strandat 1898.731 kb on + strandat 1898.731 kb on + strandat 1898.740 kb on + strandat 1898.741 kb on - strandat 1898.749 kb on + strandat 1898.749 kb on + strandat 1898.749 kb on + strandat 1898.749 kb on + strandat 1898.749 kb on + strandat 1898.750 kb on - strandat 1898.750 kb on - strandat 1898.750 kb on - strandat 1898.750 kb on - strandat 1898.824 kb on + strandat 1898.824 kb on + strandat 1898.824 kb on + strandat 1898.824 kb on + strandat 1898.891 kb on + strand, within A4249_RS09505at 1898.891 kb on + strand, within A4249_RS09505at 1898.891 kb on + strand, within A4249_RS09505at 1898.891 kb on + strand, within A4249_RS09505at 1898.892 kb on - strand, within A4249_RS09505at 1898.892 kb on - strand, within A4249_RS09505at 1898.892 kb on - strand, within A4249_RS09505at 1898.892 kb on - strand, within A4249_RS09505at 1898.892 kb on - strand, within A4249_RS09505at 1899.066 kb on - strand, within A4249_RS09505at 1899.239 kb on + strand, within A4249_RS09505at 1899.240 kb on - strand, within A4249_RS09505at 1899.248 kb on + strand, within A4249_RS09505at 1899.249 kb on - strand, within A4249_RS09505at 1899.341 kb on + strand, within A4249_RS09505at 1899.341 kb on + strand, within A4249_RS09505at 1899.341 kb on + strand, within A4249_RS09505at 1899.342 kb on - strand, within A4249_RS09505at 1899.342 kb on - strand, within A4249_RS09505at 1899.432 kb on - strandat 1899.571 kb on + strand, within A4249_RS09510at 1899.571 kb on + strand, within A4249_RS09510at 1899.572 kb on - strand, within A4249_RS09510at 1899.572 kb on - strand, within A4249_RS09510at 1899.582 kb on + strand, within A4249_RS09510at 1899.804 kb on + strand, within A4249_RS09510at 1899.804 kb on + strand, within A4249_RS09510at 1899.805 kb on - strand, within A4249_RS09510at 1899.805 kb on - strand, within A4249_RS09510at 1899.805 kb on - strand, within A4249_RS09510at 1899.805 kb on - strand, within A4249_RS09510at 1899.862 kb on + strand, within A4249_RS09510at 1899.942 kb on + strand, within A4249_RS09510at 1899.960 kb on - strand, within A4249_RS09510at 1899.966 kb on + strand, within A4249_RS09510at 1899.966 kb on + strand, within A4249_RS09510at 1899.966 kb on + strand, within A4249_RS09510at 1899.966 kb on + strand, within A4249_RS09510at 1899.967 kb on - strand, within A4249_RS09510at 1899.967 kb on - strand, within A4249_RS09510at 1899.967 kb on - strand, within A4249_RS09510at 1900.224 kb on - strand, within A4249_RS09515at 1900.305 kb on - strand, within A4249_RS09515at 1900.305 kb on - strand, within A4249_RS09515at 1900.305 kb on - strand, within A4249_RS09515at 1900.337 kb on + strandat 1900.337 kb on + strandat 1900.337 kb on + strandat 1900.337 kb on + strandat 1900.338 kb on - strandat 1900.338 kb on - strandat 1900.353 kb on + strandat 1900.354 kb on - strandat 1900.391 kb on + strandat 1900.417 kb on + strandat 1900.417 kb on + strandat 1900.417 kb on + strandat 1900.417 kb on + strandat 1900.418 kb on - strandat 1900.418 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,897,915 + A4249_RS09500 0.36 -0.2
1,897,915 + A4249_RS09500 0.36 +0.2
1,897,916 - A4249_RS09500 0.36 -0.3
1,897,916 - A4249_RS09500 0.36 +0.4
1,897,916 - A4249_RS09500 0.36 -0.7
1,897,916 - A4249_RS09500 0.36 +0.7
1,897,916 - A4249_RS09500 0.36 +1.8
1,898,104 + A4249_RS09500 0.61 +0.5
1,898,105 - A4249_RS09500 0.61 -0.8
1,898,105 - A4249_RS09500 0.61 -0.2
1,898,113 + A4249_RS09500 0.62 +0.9
1,898,113 + A4249_RS09500 0.62 +0.4
1,898,113 + A4249_RS09500 0.62 +0.1
1,898,113 + A4249_RS09500 0.62 -0.3
1,898,114 - A4249_RS09500 0.62 -0.7
1,898,114 - A4249_RS09500 0.62 +0.1
1,898,114 - A4249_RS09500 0.62 -0.1
1,898,114 - A4249_RS09500 0.62 -0.8
1,898,114 - A4249_RS09500 0.62 -0.3
1,898,580 + -0.1
1,898,581 - +0.3
1,898,662 + +0.1
1,898,663 - +0.7
1,898,667 + +0.2
1,898,667 + +0.6
1,898,667 + -0.4
1,898,668 - +0.3
1,898,668 - +1.0
1,898,731 + +0.4
1,898,731 + +1.2
1,898,731 + +0.6
1,898,740 + -1.0
1,898,741 - +0.3
1,898,749 + -0.4
1,898,749 + -0.3
1,898,749 + +0.2
1,898,749 + -0.6
1,898,749 + +0.0
1,898,750 - +0.2
1,898,750 - -0.3
1,898,750 - -0.2
1,898,750 - -0.8
1,898,824 + -0.5
1,898,824 + +0.2
1,898,824 + +0.5
1,898,824 + +1.0
1,898,891 + A4249_RS09505 0.11 -0.5
1,898,891 + A4249_RS09505 0.11 -0.5
1,898,891 + A4249_RS09505 0.11 +0.6
1,898,891 + A4249_RS09505 0.11 -0.9
1,898,892 - A4249_RS09505 0.11 +0.0
1,898,892 - A4249_RS09505 0.11 -0.4
1,898,892 - A4249_RS09505 0.11 +0.1
1,898,892 - A4249_RS09505 0.11 +0.2
1,898,892 - A4249_RS09505 0.11 -0.5
1,899,066 - A4249_RS09505 0.40 -0.6
1,899,239 + A4249_RS09505 0.68 -0.7
1,899,240 - A4249_RS09505 0.68 -0.5
1,899,248 + A4249_RS09505 0.69 +0.7
1,899,249 - A4249_RS09505 0.70 -0.2
1,899,341 + A4249_RS09505 0.85 -0.0
1,899,341 + A4249_RS09505 0.85 +0.1
1,899,341 + A4249_RS09505 0.85 +0.5
1,899,342 - A4249_RS09505 0.85 -0.7
1,899,342 - A4249_RS09505 0.85 +0.2
1,899,432 - -0.0
1,899,571 + A4249_RS09510 0.15 +0.3
1,899,571 + A4249_RS09510 0.15 -0.5
1,899,572 - A4249_RS09510 0.15 -0.4
1,899,572 - A4249_RS09510 0.15 -0.4
1,899,582 + A4249_RS09510 0.16 +1.0
1,899,804 + A4249_RS09510 0.55 +0.6
1,899,804 + A4249_RS09510 0.55 +0.8
1,899,805 - A4249_RS09510 0.55 -1.0
1,899,805 - A4249_RS09510 0.55 -1.0
1,899,805 - A4249_RS09510 0.55 +0.1
1,899,805 - A4249_RS09510 0.55 +0.0
1,899,862 + A4249_RS09510 0.65 +1.1
1,899,942 + A4249_RS09510 0.78 -0.0
1,899,960 - A4249_RS09510 0.81 +0.5
1,899,966 + A4249_RS09510 0.82 +0.2
1,899,966 + A4249_RS09510 0.82 -0.7
1,899,966 + A4249_RS09510 0.82 +0.4
1,899,966 + A4249_RS09510 0.82 -0.6
1,899,967 - A4249_RS09510 0.83 -0.2
1,899,967 - A4249_RS09510 0.83 +0.1
1,899,967 - A4249_RS09510 0.83 +0.3
1,900,224 - A4249_RS09515 0.53 +0.4
1,900,305 - A4249_RS09515 0.82 -0.4
1,900,305 - A4249_RS09515 0.82 +0.6
1,900,305 - A4249_RS09515 0.82 +0.4
1,900,337 + -0.0
1,900,337 + -0.1
1,900,337 + -0.7
1,900,337 + +1.1
1,900,338 - +0.3
1,900,338 - -1.5
1,900,353 + +0.4
1,900,354 - -0.1
1,900,391 + -0.5
1,900,417 + -0.0
1,900,417 + -0.1
1,900,417 + +0.4
1,900,417 + -0.0
1,900,418 - +0.1
1,900,418 - -0.1

Or see this region's nucleotide sequence