Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09500

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09490 and A4249_RS09495 are separated by 51 nucleotidesA4249_RS09495 and A4249_RS09500 are separated by 8 nucleotidesA4249_RS09500 and A4249_RS09505 are separated by 424 nucleotides A4249_RS09490: A4249_RS09490 - response regulator, at 1,895,390 to 1,896,778 _RS09490 A4249_RS09495: A4249_RS09495 - folate-binding protein YgfZ, at 1,896,830 to 1,897,633 _RS09495 A4249_RS09500: A4249_RS09500 - 3-oxoacyl-ACP reductase, at 1,897,642 to 1,898,400 _RS09500 A4249_RS09505: A4249_RS09505 - DNA-3-methyladenine glycosylase I, at 1,898,825 to 1,899,433 _RS09505 Position (kb) 1897 1898 1899Strain fitness (log2 ratio) -1 0 1 2at 1896.818 kb on + strandat 1896.818 kb on + strandat 1896.818 kb on + strandat 1896.818 kb on + strandat 1896.819 kb on - strandat 1897.076 kb on + strand, within A4249_RS09495at 1897.233 kb on - strand, within A4249_RS09495at 1897.915 kb on + strand, within A4249_RS09500at 1897.915 kb on + strand, within A4249_RS09500at 1897.916 kb on - strand, within A4249_RS09500at 1897.916 kb on - strand, within A4249_RS09500at 1897.916 kb on - strand, within A4249_RS09500at 1897.916 kb on - strand, within A4249_RS09500at 1897.916 kb on - strand, within A4249_RS09500at 1898.104 kb on + strand, within A4249_RS09500at 1898.105 kb on - strand, within A4249_RS09500at 1898.105 kb on - strand, within A4249_RS09500at 1898.113 kb on + strand, within A4249_RS09500at 1898.113 kb on + strand, within A4249_RS09500at 1898.113 kb on + strand, within A4249_RS09500at 1898.113 kb on + strand, within A4249_RS09500at 1898.114 kb on - strand, within A4249_RS09500at 1898.114 kb on - strand, within A4249_RS09500at 1898.114 kb on - strand, within A4249_RS09500at 1898.114 kb on - strand, within A4249_RS09500at 1898.114 kb on - strand, within A4249_RS09500at 1898.580 kb on + strandat 1898.581 kb on - strandat 1898.662 kb on + strandat 1898.663 kb on - strandat 1898.667 kb on + strandat 1898.667 kb on + strandat 1898.667 kb on + strandat 1898.668 kb on - strandat 1898.668 kb on - strandat 1898.731 kb on + strandat 1898.731 kb on + strandat 1898.731 kb on + strandat 1898.740 kb on + strandat 1898.741 kb on - strandat 1898.749 kb on + strandat 1898.749 kb on + strandat 1898.749 kb on + strandat 1898.749 kb on + strandat 1898.749 kb on + strandat 1898.750 kb on - strandat 1898.750 kb on - strandat 1898.750 kb on - strandat 1898.750 kb on - strandat 1898.824 kb on + strandat 1898.824 kb on + strandat 1898.824 kb on + strandat 1898.824 kb on + strandat 1898.891 kb on + strand, within A4249_RS09505at 1898.891 kb on + strand, within A4249_RS09505at 1898.891 kb on + strand, within A4249_RS09505at 1898.891 kb on + strand, within A4249_RS09505at 1898.892 kb on - strand, within A4249_RS09505at 1898.892 kb on - strand, within A4249_RS09505at 1898.892 kb on - strand, within A4249_RS09505at 1898.892 kb on - strand, within A4249_RS09505at 1898.892 kb on - strand, within A4249_RS09505at 1899.066 kb on - strand, within A4249_RS09505at 1899.239 kb on + strand, within A4249_RS09505at 1899.240 kb on - strand, within A4249_RS09505at 1899.248 kb on + strand, within A4249_RS09505at 1899.249 kb on - strand, within A4249_RS09505at 1899.341 kb on + strand, within A4249_RS09505at 1899.341 kb on + strand, within A4249_RS09505at 1899.341 kb on + strand, within A4249_RS09505at 1899.342 kb on - strand, within A4249_RS09505at 1899.342 kb on - strand, within A4249_RS09505

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,896,818 + -0.4
1,896,818 + +0.9
1,896,818 + +0.1
1,896,818 + -0.0
1,896,819 - +0.2
1,897,076 + A4249_RS09495 0.31 -0.7
1,897,233 - A4249_RS09495 0.50 +0.7
1,897,915 + A4249_RS09500 0.36 -0.2
1,897,915 + A4249_RS09500 0.36 +0.2
1,897,916 - A4249_RS09500 0.36 -0.3
1,897,916 - A4249_RS09500 0.36 +0.4
1,897,916 - A4249_RS09500 0.36 -0.7
1,897,916 - A4249_RS09500 0.36 +0.7
1,897,916 - A4249_RS09500 0.36 +1.8
1,898,104 + A4249_RS09500 0.61 +0.5
1,898,105 - A4249_RS09500 0.61 -0.8
1,898,105 - A4249_RS09500 0.61 -0.2
1,898,113 + A4249_RS09500 0.62 +0.9
1,898,113 + A4249_RS09500 0.62 +0.4
1,898,113 + A4249_RS09500 0.62 +0.1
1,898,113 + A4249_RS09500 0.62 -0.3
1,898,114 - A4249_RS09500 0.62 -0.7
1,898,114 - A4249_RS09500 0.62 +0.1
1,898,114 - A4249_RS09500 0.62 -0.1
1,898,114 - A4249_RS09500 0.62 -0.8
1,898,114 - A4249_RS09500 0.62 -0.3
1,898,580 + -0.1
1,898,581 - +0.3
1,898,662 + +0.1
1,898,663 - +0.7
1,898,667 + +0.2
1,898,667 + +0.6
1,898,667 + -0.4
1,898,668 - +0.3
1,898,668 - +1.0
1,898,731 + +0.4
1,898,731 + +1.2
1,898,731 + +0.6
1,898,740 + -1.0
1,898,741 - +0.3
1,898,749 + -0.4
1,898,749 + -0.3
1,898,749 + +0.2
1,898,749 + -0.6
1,898,749 + +0.0
1,898,750 - +0.2
1,898,750 - -0.3
1,898,750 - -0.2
1,898,750 - -0.8
1,898,824 + -0.5
1,898,824 + +0.2
1,898,824 + +0.5
1,898,824 + +1.0
1,898,891 + A4249_RS09505 0.11 -0.5
1,898,891 + A4249_RS09505 0.11 -0.5
1,898,891 + A4249_RS09505 0.11 +0.6
1,898,891 + A4249_RS09505 0.11 -0.9
1,898,892 - A4249_RS09505 0.11 +0.0
1,898,892 - A4249_RS09505 0.11 -0.4
1,898,892 - A4249_RS09505 0.11 +0.1
1,898,892 - A4249_RS09505 0.11 +0.2
1,898,892 - A4249_RS09505 0.11 -0.5
1,899,066 - A4249_RS09505 0.40 -0.6
1,899,239 + A4249_RS09505 0.68 -0.7
1,899,240 - A4249_RS09505 0.68 -0.5
1,899,248 + A4249_RS09505 0.69 +0.7
1,899,249 - A4249_RS09505 0.70 -0.2
1,899,341 + A4249_RS09505 0.85 -0.0
1,899,341 + A4249_RS09505 0.85 +0.1
1,899,341 + A4249_RS09505 0.85 +0.5
1,899,342 - A4249_RS09505 0.85 -0.7
1,899,342 - A4249_RS09505 0.85 +0.2

Or see this region's nucleotide sequence