Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09405

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09395 and A4249_RS09400 overlap by 4 nucleotidesA4249_RS09400 and A4249_RS09405 are separated by 6 nucleotidesA4249_RS09405 and A4249_RS09410 overlap by 4 nucleotidesA4249_RS09410 and A4249_RS09415 are separated by 76 nucleotides A4249_RS09395: A4249_RS09395 - SMC-Scp complex subunit ScpB, at 1,878,236 to 1,878,916 _RS09395 A4249_RS09400: A4249_RS09400 - ScpA family protein, at 1,878,913 to 1,879,731 _RS09400 A4249_RS09405: A4249_RS09405 - beta-N-acetylhexosaminidase, at 1,879,738 to 1,880,787 _RS09405 A4249_RS09410: A4249_RS09410 - SPOR domain-containing protein, at 1,880,784 to 1,881,560 _RS09410 A4249_RS09415: A4249_RS09415 - deoxyguanosinetriphosphate triphosphohydrolase, at 1,881,637 to 1,882,827 _RS09415 Position (kb) 1879 1880 1881Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1878.756 kb on + strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.959 kb on + strandat 1878.959 kb on + strandat 1878.959 kb on + strandat 1878.959 kb on + strandat 1878.959 kb on + strandat 1879.044 kb on + strand, within A4249_RS09400at 1879.044 kb on + strand, within A4249_RS09400at 1879.229 kb on + strand, within A4249_RS09400at 1879.230 kb on - strand, within A4249_RS09400at 1879.230 kb on - strand, within A4249_RS09400at 1879.230 kb on - strand, within A4249_RS09400at 1879.230 kb on - strand, within A4249_RS09400at 1879.230 kb on - strand, within A4249_RS09400at 1879.247 kb on + strand, within A4249_RS09400at 1879.248 kb on - strand, within A4249_RS09400at 1879.248 kb on - strand, within A4249_RS09400at 1879.248 kb on - strand, within A4249_RS09400at 1879.248 kb on - strand, within A4249_RS09400at 1879.381 kb on + strand, within A4249_RS09400at 1879.475 kb on + strand, within A4249_RS09400at 1879.475 kb on + strand, within A4249_RS09400at 1879.475 kb on + strand, within A4249_RS09400at 1879.476 kb on - strand, within A4249_RS09400at 1879.502 kb on + strand, within A4249_RS09400at 1879.503 kb on - strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.556 kb on + strand, within A4249_RS09400at 1879.557 kb on - strand, within A4249_RS09400at 1879.557 kb on - strand, within A4249_RS09400at 1879.557 kb on - strand, within A4249_RS09400at 1879.557 kb on - strand, within A4249_RS09400at 1879.646 kb on + strand, within A4249_RS09400at 1879.647 kb on - strand, within A4249_RS09400at 1879.647 kb on - strand, within A4249_RS09400at 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.731 kb on + strandat 1879.732 kb on - strandat 1879.732 kb on - strandat 1879.732 kb on - strandat 1879.732 kb on - strandat 1879.732 kb on - strandat 1879.739 kb on + strandat 1879.739 kb on + strandat 1879.739 kb on + strandat 1879.739 kb on + strandat 1879.739 kb on + strandat 1879.740 kb on - strandat 1879.740 kb on - strandat 1879.740 kb on - strandat 1879.740 kb on - strandat 1880.116 kb on - strand, within A4249_RS09405at 1880.277 kb on + strand, within A4249_RS09405at 1880.277 kb on + strand, within A4249_RS09405at 1880.277 kb on + strand, within A4249_RS09405at 1880.277 kb on + strand, within A4249_RS09405at 1880.278 kb on - strand, within A4249_RS09405at 1880.407 kb on + strand, within A4249_RS09405at 1880.407 kb on + strand, within A4249_RS09405at 1880.768 kb on + strandat 1880.768 kb on + strandat 1880.769 kb on - strandat 1880.769 kb on - strandat 1880.769 kb on - strandat 1880.769 kb on - strandat 1880.769 kb on - strandat 1880.769 kb on - strandat 1880.965 kb on + strand, within A4249_RS09410at 1881.114 kb on - strand, within A4249_RS09410at 1881.519 kb on - strandat 1881.612 kb on + strandat 1881.612 kb on + strandat 1881.612 kb on + strandat 1881.612 kb on + strandat 1881.613 kb on - strandat 1881.613 kb on - strandat 1881.613 kb on - strandat 1881.685 kb on + strandat 1881.685 kb on + strandat 1881.685 kb on + strandat 1881.685 kb on + strandat 1881.686 kb on - strandat 1881.686 kb on - strandat 1881.686 kb on - strandat 1881.692 kb on + strandat 1881.693 kb on - strandat 1881.716 kb on + strandat 1881.716 kb on + strandat 1881.716 kb on + strandat 1881.716 kb on + strandat 1881.717 kb on - strandat 1881.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,878,756 + A4249_RS09395 0.76 +0.1
1,878,757 - A4249_RS09395 0.77 -0.3
1,878,757 - A4249_RS09395 0.77 -0.9
1,878,757 - A4249_RS09395 0.77 -0.6
1,878,757 - A4249_RS09395 0.77 +2.0
1,878,959 + +0.4
1,878,959 + -1.0
1,878,959 + +1.2
1,878,959 + -0.4
1,878,959 + -0.7
1,879,044 + A4249_RS09400 0.16 -0.1
1,879,044 + A4249_RS09400 0.16 -0.5
1,879,229 + A4249_RS09400 0.39 +0.1
1,879,230 - A4249_RS09400 0.39 +0.8
1,879,230 - A4249_RS09400 0.39 +0.4
1,879,230 - A4249_RS09400 0.39 +0.1
1,879,230 - A4249_RS09400 0.39 -0.2
1,879,230 - A4249_RS09400 0.39 -0.2
1,879,247 + A4249_RS09400 0.41 +0.2
1,879,248 - A4249_RS09400 0.41 -0.5
1,879,248 - A4249_RS09400 0.41 -0.4
1,879,248 - A4249_RS09400 0.41 -0.5
1,879,248 - A4249_RS09400 0.41 -0.4
1,879,381 + A4249_RS09400 0.57 -1.2
1,879,475 + A4249_RS09400 0.69 +2.0
1,879,475 + A4249_RS09400 0.69 +0.9
1,879,475 + A4249_RS09400 0.69 +0.2
1,879,476 - A4249_RS09400 0.69 +0.3
1,879,502 + A4249_RS09400 0.72 -1.3
1,879,503 - A4249_RS09400 0.72 -0.0
1,879,556 + A4249_RS09400 0.79 +0.3
1,879,556 + A4249_RS09400 0.79 +1.1
1,879,556 + A4249_RS09400 0.79 -0.7
1,879,556 + A4249_RS09400 0.79 -0.1
1,879,556 + A4249_RS09400 0.79 +0.1
1,879,556 + A4249_RS09400 0.79 -1.2
1,879,557 - A4249_RS09400 0.79 -0.2
1,879,557 - A4249_RS09400 0.79 -0.1
1,879,557 - A4249_RS09400 0.79 -1.1
1,879,557 - A4249_RS09400 0.79 +0.2
1,879,646 + A4249_RS09400 0.89 -1.1
1,879,647 - A4249_RS09400 0.90 +0.7
1,879,647 - A4249_RS09400 0.90 -0.3
1,879,731 + -0.5
1,879,731 + +1.0
1,879,731 + +0.0
1,879,731 + +0.4
1,879,731 + -0.3
1,879,731 + +0.8
1,879,731 + +0.5
1,879,732 - -0.4
1,879,732 - +0.3
1,879,732 - -0.4
1,879,732 - -0.0
1,879,732 - -0.2
1,879,739 + +0.1
1,879,739 + -0.1
1,879,739 + +0.1
1,879,739 + -1.4
1,879,739 + -0.7
1,879,740 - +0.2
1,879,740 - +0.1
1,879,740 - +1.6
1,879,740 - -1.7
1,880,116 - A4249_RS09405 0.36 +0.9
1,880,277 + A4249_RS09405 0.51 +0.4
1,880,277 + A4249_RS09405 0.51 -1.0
1,880,277 + A4249_RS09405 0.51 -0.7
1,880,277 + A4249_RS09405 0.51 +0.9
1,880,278 - A4249_RS09405 0.51 -1.2
1,880,407 + A4249_RS09405 0.64 +1.2
1,880,407 + A4249_RS09405 0.64 -1.1
1,880,768 + -0.9
1,880,768 + +0.4
1,880,769 - +0.3
1,880,769 - -0.5
1,880,769 - +1.0
1,880,769 - -1.1
1,880,769 - -0.7
1,880,769 - +0.7
1,880,965 + A4249_RS09410 0.23 -0.8
1,881,114 - A4249_RS09410 0.42 +1.1
1,881,519 - +0.9
1,881,612 + +0.3
1,881,612 + +0.5
1,881,612 + -0.9
1,881,612 + +0.3
1,881,613 - +0.8
1,881,613 - -1.5
1,881,613 - +0.1
1,881,685 + -0.7
1,881,685 + -0.3
1,881,685 + +0.2
1,881,685 + +0.5
1,881,686 - -0.7
1,881,686 - -1.8
1,881,686 - -0.6
1,881,692 + +3.1
1,881,693 - +0.8
1,881,716 + -0.9
1,881,716 + -0.5
1,881,716 + +0.3
1,881,716 + -1.1
1,881,717 - +0.6
1,881,717 - +0.8

Or see this region's nucleotide sequence