Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09320

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09315 and A4249_RS09320 are separated by 135 nucleotidesA4249_RS09320 and A4249_RS09325 are separated by 346 nucleotides A4249_RS09315: A4249_RS09315 - class 1 fructose-bisphosphatase, at 1,863,463 to 1,864,428 _RS09315 A4249_RS09320: A4249_RS09320 - alpha/beta hydrolase, at 1,864,564 to 1,865,601 _RS09320 A4249_RS09325: A4249_RS09325 - glycine cleavage system aminomethyltransferase GcvT, at 1,865,948 to 1,867,060 _RS09325 Position (kb) 1864 1865 1866Strain fitness (log2 ratio) -1 0 1 2at 1863.623 kb on + strand, within A4249_RS09315at 1863.624 kb on - strand, within A4249_RS09315at 1863.624 kb on - strand, within A4249_RS09315at 1863.624 kb on - strand, within A4249_RS09315at 1863.624 kb on - strand, within A4249_RS09315at 1863.624 kb on - strand, within A4249_RS09315at 1863.675 kb on - strand, within A4249_RS09315at 1863.702 kb on + strand, within A4249_RS09315at 1863.702 kb on + strand, within A4249_RS09315at 1863.794 kb on + strand, within A4249_RS09315at 1863.794 kb on + strand, within A4249_RS09315at 1863.795 kb on - strand, within A4249_RS09315at 1863.795 kb on - strand, within A4249_RS09315at 1863.968 kb on + strand, within A4249_RS09315at 1863.969 kb on - strand, within A4249_RS09315at 1863.978 kb on - strand, within A4249_RS09315at 1863.978 kb on - strand, within A4249_RS09315at 1863.978 kb on - strand, within A4249_RS09315at 1864.542 kb on + strandat 1864.542 kb on + strandat 1864.543 kb on - strandat 1864.543 kb on - strandat 1864.822 kb on - strand, within A4249_RS09320at 1864.925 kb on + strand, within A4249_RS09320at 1864.925 kb on + strand, within A4249_RS09320at 1864.926 kb on - strand, within A4249_RS09320at 1864.926 kb on - strand, within A4249_RS09320at 1865.114 kb on + strand, within A4249_RS09320at 1865.114 kb on + strand, within A4249_RS09320at 1865.115 kb on - strand, within A4249_RS09320at 1865.115 kb on - strand, within A4249_RS09320at 1865.231 kb on + strand, within A4249_RS09320at 1865.232 kb on - strand, within A4249_RS09320at 1865.321 kb on + strand, within A4249_RS09320at 1865.321 kb on + strand, within A4249_RS09320at 1865.322 kb on - strand, within A4249_RS09320at 1865.322 kb on - strand, within A4249_RS09320at 1865.322 kb on - strand, within A4249_RS09320at 1865.322 kb on - strand, within A4249_RS09320at 1865.322 kb on - strand, within A4249_RS09320at 1865.358 kb on + strand, within A4249_RS09320at 1865.358 kb on + strand, within A4249_RS09320at 1865.358 kb on + strand, within A4249_RS09320at 1865.358 kb on + strand, within A4249_RS09320at 1865.358 kb on + strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.590 kb on + strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.591 kb on - strandat 1865.592 kb on + strandat 1865.593 kb on - strandat 1865.593 kb on - strandat 1865.700 kb on + strandat 1865.700 kb on + strandat 1865.701 kb on - strandat 1865.701 kb on - strandat 1865.972 kb on - strandat 1865.972 kb on - strandat 1865.972 kb on - strandat 1865.980 kb on + strandat 1866.029 kb on + strandat 1866.030 kb on - strandat 1866.030 kb on - strandat 1866.047 kb on + strandat 1866.179 kb on + strand, within A4249_RS09325at 1866.180 kb on - strand, within A4249_RS09325at 1866.180 kb on - strand, within A4249_RS09325at 1866.180 kb on - strand, within A4249_RS09325at 1866.180 kb on - strand, within A4249_RS09325at 1866.209 kb on + strand, within A4249_RS09325at 1866.210 kb on - strand, within A4249_RS09325at 1866.210 kb on - strand, within A4249_RS09325at 1866.210 kb on - strand, within A4249_RS09325at 1866.210 kb on - strand, within A4249_RS09325at 1866.210 kb on - strand, within A4249_RS09325at 1866.210 kb on - strand, within A4249_RS09325at 1866.307 kb on + strand, within A4249_RS09325at 1866.494 kb on + strand, within A4249_RS09325at 1866.494 kb on + strand, within A4249_RS09325at 1866.494 kb on + strand, within A4249_RS09325at 1866.494 kb on + strand, within A4249_RS09325at 1866.495 kb on - strand, within A4249_RS09325at 1866.495 kb on - strand, within A4249_RS09325at 1866.495 kb on - strand, within A4249_RS09325at 1866.513 kb on - strand, within A4249_RS09325at 1866.513 kb on - strand, within A4249_RS09325at 1866.513 kb on - strand, within A4249_RS09325

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,863,623 + A4249_RS09315 0.17 -0.6
1,863,624 - A4249_RS09315 0.17 +0.7
1,863,624 - A4249_RS09315 0.17 -0.7
1,863,624 - A4249_RS09315 0.17 +0.7
1,863,624 - A4249_RS09315 0.17 -0.3
1,863,624 - A4249_RS09315 0.17 +1.3
1,863,675 - A4249_RS09315 0.22 +0.4
1,863,702 + A4249_RS09315 0.25 +0.7
1,863,702 + A4249_RS09315 0.25 +1.1
1,863,794 + A4249_RS09315 0.34 +0.4
1,863,794 + A4249_RS09315 0.34 +1.2
1,863,795 - A4249_RS09315 0.34 +0.2
1,863,795 - A4249_RS09315 0.34 +2.2
1,863,968 + A4249_RS09315 0.52 -0.1
1,863,969 - A4249_RS09315 0.52 +0.3
1,863,978 - A4249_RS09315 0.53 -0.3
1,863,978 - A4249_RS09315 0.53 -1.4
1,863,978 - A4249_RS09315 0.53 -1.1
1,864,542 + +0.7
1,864,542 + -0.8
1,864,543 - +0.5
1,864,543 - +0.0
1,864,822 - A4249_RS09320 0.25 +0.2
1,864,925 + A4249_RS09320 0.35 +0.7
1,864,925 + A4249_RS09320 0.35 -0.1
1,864,926 - A4249_RS09320 0.35 -0.8
1,864,926 - A4249_RS09320 0.35 -0.2
1,865,114 + A4249_RS09320 0.53 -1.5
1,865,114 + A4249_RS09320 0.53 +0.1
1,865,115 - A4249_RS09320 0.53 -0.3
1,865,115 - A4249_RS09320 0.53 +0.1
1,865,231 + A4249_RS09320 0.64 +0.8
1,865,232 - A4249_RS09320 0.64 -0.7
1,865,321 + A4249_RS09320 0.73 +0.7
1,865,321 + A4249_RS09320 0.73 +0.9
1,865,322 - A4249_RS09320 0.73 -0.4
1,865,322 - A4249_RS09320 0.73 -0.4
1,865,322 - A4249_RS09320 0.73 +0.3
1,865,322 - A4249_RS09320 0.73 -0.0
1,865,322 - A4249_RS09320 0.73 -0.6
1,865,358 + A4249_RS09320 0.76 -0.2
1,865,358 + A4249_RS09320 0.76 -0.4
1,865,358 + A4249_RS09320 0.76 -0.3
1,865,358 + A4249_RS09320 0.76 +0.2
1,865,358 + A4249_RS09320 0.76 +0.2
1,865,359 - A4249_RS09320 0.77 -0.7
1,865,359 - A4249_RS09320 0.77 +0.8
1,865,359 - A4249_RS09320 0.77 +0.6
1,865,359 - A4249_RS09320 0.77 +0.7
1,865,359 - A4249_RS09320 0.77 +0.1
1,865,359 - A4249_RS09320 0.77 -0.4
1,865,590 + +0.7
1,865,590 + +0.3
1,865,590 + +1.4
1,865,591 - +0.2
1,865,591 - -0.2
1,865,591 - +0.9
1,865,591 - -0.1
1,865,592 + +0.1
1,865,593 - +0.2
1,865,593 - -0.4
1,865,700 + +0.4
1,865,700 + -0.3
1,865,701 - -1.1
1,865,701 - +0.7
1,865,972 - +1.2
1,865,972 - +0.7
1,865,972 - +0.4
1,865,980 + -0.1
1,866,029 + -1.5
1,866,030 - +1.7
1,866,030 - +0.5
1,866,047 + +0.5
1,866,179 + A4249_RS09325 0.21 -0.1
1,866,180 - A4249_RS09325 0.21 -0.1
1,866,180 - A4249_RS09325 0.21 -0.2
1,866,180 - A4249_RS09325 0.21 +0.7
1,866,180 - A4249_RS09325 0.21 +0.5
1,866,209 + A4249_RS09325 0.23 -0.2
1,866,210 - A4249_RS09325 0.24 -1.7
1,866,210 - A4249_RS09325 0.24 +1.1
1,866,210 - A4249_RS09325 0.24 +0.8
1,866,210 - A4249_RS09325 0.24 -0.1
1,866,210 - A4249_RS09325 0.24 +1.0
1,866,210 - A4249_RS09325 0.24 +0.9
1,866,307 + A4249_RS09325 0.32 -1.7
1,866,494 + A4249_RS09325 0.49 +1.2
1,866,494 + A4249_RS09325 0.49 +0.1
1,866,494 + A4249_RS09325 0.49 +1.9
1,866,494 + A4249_RS09325 0.49 -0.4
1,866,495 - A4249_RS09325 0.49 -0.1
1,866,495 - A4249_RS09325 0.49 +0.1
1,866,495 - A4249_RS09325 0.49 -1.2
1,866,513 - A4249_RS09325 0.51 +0.8
1,866,513 - A4249_RS09325 0.51 -1.1
1,866,513 - A4249_RS09325 0.51 +1.0

Or see this region's nucleotide sequence