Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09315

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09305 and A4249_RS09310 are separated by 7 nucleotidesA4249_RS09310 and A4249_RS09315 overlap by 1 nucleotidesA4249_RS09315 and A4249_RS09320 are separated by 135 nucleotides A4249_RS09305: A4249_RS09305 - type VI secretion protein ImpB, at 1,861,546 to 1,862,835 _RS09305 A4249_RS09310: A4249_RS09310 - bifunctional nicotinamidase/pyrazinamidase, at 1,862,843 to 1,863,463 _RS09310 A4249_RS09315: A4249_RS09315 - class 1 fructose-bisphosphatase, at 1,863,463 to 1,864,428 _RS09315 A4249_RS09320: A4249_RS09320 - alpha/beta hydrolase, at 1,864,564 to 1,865,601 _RS09320 Position (kb) 1863 1864 1865Strain fitness (log2 ratio) -1 0 1 2at 1862.593 kb on + strand, within A4249_RS09305at 1862.593 kb on + strand, within A4249_RS09305at 1862.593 kb on + strand, within A4249_RS09305at 1862.593 kb on + strand, within A4249_RS09305at 1862.593 kb on + strand, within A4249_RS09305at 1862.593 kb on + strand, within A4249_RS09305at 1862.593 kb on + strand, within A4249_RS09305at 1862.593 kb on + strand, within A4249_RS09305at 1862.593 kb on + strand, within A4249_RS09305at 1862.594 kb on - strand, within A4249_RS09305at 1862.594 kb on - strand, within A4249_RS09305at 1862.594 kb on - strand, within A4249_RS09305at 1862.594 kb on - strand, within A4249_RS09305at 1862.594 kb on - strand, within A4249_RS09305at 1862.594 kb on - strand, within A4249_RS09305at 1862.776 kb on + strandat 1862.776 kb on + strandat 1862.776 kb on + strandat 1862.776 kb on + strandat 1862.777 kb on - strandat 1862.777 kb on - strandat 1862.777 kb on - strandat 1862.777 kb on - strandat 1862.777 kb on - strandat 1862.778 kb on + strandat 1862.779 kb on - strandat 1862.779 kb on - strandat 1862.779 kb on - strandat 1862.844 kb on + strandat 1862.844 kb on + strandat 1862.844 kb on + strandat 1862.845 kb on - strandat 1862.845 kb on - strandat 1862.845 kb on - strandat 1862.845 kb on - strandat 1862.845 kb on - strandat 1862.845 kb on - strandat 1862.845 kb on - strandat 1863.006 kb on + strand, within A4249_RS09310at 1863.006 kb on + strand, within A4249_RS09310at 1863.006 kb on + strand, within A4249_RS09310at 1863.007 kb on - strand, within A4249_RS09310at 1863.111 kb on + strand, within A4249_RS09310at 1863.111 kb on + strand, within A4249_RS09310at 1863.111 kb on + strand, within A4249_RS09310at 1863.111 kb on + strand, within A4249_RS09310at 1863.111 kb on + strand, within A4249_RS09310at 1863.112 kb on - strand, within A4249_RS09310at 1863.112 kb on - strand, within A4249_RS09310at 1863.130 kb on + strand, within A4249_RS09310at 1863.130 kb on + strand, within A4249_RS09310at 1863.130 kb on + strand, within A4249_RS09310at 1863.130 kb on + strand, within A4249_RS09310at 1863.130 kb on + strand, within A4249_RS09310at 1863.130 kb on + strand, within A4249_RS09310at 1863.131 kb on - strand, within A4249_RS09310at 1863.131 kb on - strand, within A4249_RS09310at 1863.131 kb on - strand, within A4249_RS09310at 1863.131 kb on - strand, within A4249_RS09310at 1863.131 kb on - strand, within A4249_RS09310at 1863.132 kb on + strand, within A4249_RS09310at 1863.132 kb on + strand, within A4249_RS09310at 1863.132 kb on + strand, within A4249_RS09310at 1863.133 kb on - strand, within A4249_RS09310at 1863.133 kb on - strand, within A4249_RS09310at 1863.133 kb on - strand, within A4249_RS09310at 1863.133 kb on - strand, within A4249_RS09310at 1863.133 kb on - strand, within A4249_RS09310at 1863.133 kb on - strand, within A4249_RS09310at 1863.133 kb on - strand, within A4249_RS09310at 1863.133 kb on - strand, within A4249_RS09310at 1863.133 kb on - strand, within A4249_RS09310at 1863.246 kb on + strand, within A4249_RS09310at 1863.246 kb on + strand, within A4249_RS09310at 1863.247 kb on - strand, within A4249_RS09310at 1863.623 kb on + strand, within A4249_RS09315at 1863.624 kb on - strand, within A4249_RS09315at 1863.624 kb on - strand, within A4249_RS09315at 1863.624 kb on - strand, within A4249_RS09315at 1863.624 kb on - strand, within A4249_RS09315at 1863.624 kb on - strand, within A4249_RS09315at 1863.675 kb on - strand, within A4249_RS09315at 1863.702 kb on + strand, within A4249_RS09315at 1863.702 kb on + strand, within A4249_RS09315at 1863.794 kb on + strand, within A4249_RS09315at 1863.794 kb on + strand, within A4249_RS09315at 1863.795 kb on - strand, within A4249_RS09315at 1863.795 kb on - strand, within A4249_RS09315at 1863.968 kb on + strand, within A4249_RS09315at 1863.969 kb on - strand, within A4249_RS09315at 1863.978 kb on - strand, within A4249_RS09315at 1863.978 kb on - strand, within A4249_RS09315at 1863.978 kb on - strand, within A4249_RS09315at 1864.542 kb on + strandat 1864.542 kb on + strandat 1864.543 kb on - strandat 1864.543 kb on - strandat 1864.822 kb on - strand, within A4249_RS09320at 1864.925 kb on + strand, within A4249_RS09320at 1864.925 kb on + strand, within A4249_RS09320at 1864.926 kb on - strand, within A4249_RS09320at 1864.926 kb on - strand, within A4249_RS09320at 1865.114 kb on + strand, within A4249_RS09320at 1865.114 kb on + strand, within A4249_RS09320at 1865.115 kb on - strand, within A4249_RS09320at 1865.115 kb on - strand, within A4249_RS09320at 1865.231 kb on + strand, within A4249_RS09320at 1865.232 kb on - strand, within A4249_RS09320at 1865.321 kb on + strand, within A4249_RS09320at 1865.321 kb on + strand, within A4249_RS09320at 1865.322 kb on - strand, within A4249_RS09320at 1865.322 kb on - strand, within A4249_RS09320at 1865.322 kb on - strand, within A4249_RS09320at 1865.322 kb on - strand, within A4249_RS09320at 1865.322 kb on - strand, within A4249_RS09320at 1865.358 kb on + strand, within A4249_RS09320at 1865.358 kb on + strand, within A4249_RS09320at 1865.358 kb on + strand, within A4249_RS09320at 1865.358 kb on + strand, within A4249_RS09320at 1865.358 kb on + strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320at 1865.359 kb on - strand, within A4249_RS09320

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,862,593 + A4249_RS09305 0.81 -0.6
1,862,593 + A4249_RS09305 0.81 +0.7
1,862,593 + A4249_RS09305 0.81 -0.4
1,862,593 + A4249_RS09305 0.81 +0.4
1,862,593 + A4249_RS09305 0.81 -0.3
1,862,593 + A4249_RS09305 0.81 -0.3
1,862,593 + A4249_RS09305 0.81 +0.5
1,862,593 + A4249_RS09305 0.81 -0.4
1,862,593 + A4249_RS09305 0.81 +0.3
1,862,594 - A4249_RS09305 0.81 +0.6
1,862,594 - A4249_RS09305 0.81 +0.0
1,862,594 - A4249_RS09305 0.81 -0.1
1,862,594 - A4249_RS09305 0.81 +0.5
1,862,594 - A4249_RS09305 0.81 +0.4
1,862,594 - A4249_RS09305 0.81 +0.5
1,862,776 + +0.1
1,862,776 + +0.2
1,862,776 + -0.2
1,862,776 + +0.3
1,862,777 - -0.1
1,862,777 - +0.6
1,862,777 - +0.3
1,862,777 - -0.2
1,862,777 - +0.2
1,862,778 + +0.1
1,862,779 - -0.1
1,862,779 - +0.4
1,862,779 - +0.2
1,862,844 + -0.1
1,862,844 + -0.7
1,862,844 + +0.4
1,862,845 - -0.2
1,862,845 - -0.1
1,862,845 - +0.2
1,862,845 - -1.3
1,862,845 - +0.0
1,862,845 - -0.7
1,862,845 - +0.1
1,863,006 + A4249_RS09310 0.26 -0.1
1,863,006 + A4249_RS09310 0.26 +0.4
1,863,006 + A4249_RS09310 0.26 +0.2
1,863,007 - A4249_RS09310 0.26 -0.0
1,863,111 + A4249_RS09310 0.43 +0.4
1,863,111 + A4249_RS09310 0.43 +0.1
1,863,111 + A4249_RS09310 0.43 -0.4
1,863,111 + A4249_RS09310 0.43 -0.2
1,863,111 + A4249_RS09310 0.43 -0.5
1,863,112 - A4249_RS09310 0.43 +0.2
1,863,112 - A4249_RS09310 0.43 -0.1
1,863,130 + A4249_RS09310 0.46 +0.1
1,863,130 + A4249_RS09310 0.46 +0.4
1,863,130 + A4249_RS09310 0.46 +0.1
1,863,130 + A4249_RS09310 0.46 +0.0
1,863,130 + A4249_RS09310 0.46 -0.2
1,863,130 + A4249_RS09310 0.46 -0.2
1,863,131 - A4249_RS09310 0.46 +0.1
1,863,131 - A4249_RS09310 0.46 +0.2
1,863,131 - A4249_RS09310 0.46 -0.3
1,863,131 - A4249_RS09310 0.46 -0.0
1,863,131 - A4249_RS09310 0.46 -0.2
1,863,132 + A4249_RS09310 0.47 +0.4
1,863,132 + A4249_RS09310 0.47 -1.7
1,863,132 + A4249_RS09310 0.47 +0.6
1,863,133 - A4249_RS09310 0.47 -0.3
1,863,133 - A4249_RS09310 0.47 +0.4
1,863,133 - A4249_RS09310 0.47 -0.1
1,863,133 - A4249_RS09310 0.47 -0.4
1,863,133 - A4249_RS09310 0.47 +0.8
1,863,133 - A4249_RS09310 0.47 -0.9
1,863,133 - A4249_RS09310 0.47 -0.4
1,863,133 - A4249_RS09310 0.47 -0.0
1,863,133 - A4249_RS09310 0.47 -0.2
1,863,246 + A4249_RS09310 0.65 +0.1
1,863,246 + A4249_RS09310 0.65 -0.5
1,863,247 - A4249_RS09310 0.65 -0.3
1,863,623 + A4249_RS09315 0.17 -0.6
1,863,624 - A4249_RS09315 0.17 +0.7
1,863,624 - A4249_RS09315 0.17 -0.7
1,863,624 - A4249_RS09315 0.17 +0.7
1,863,624 - A4249_RS09315 0.17 -0.3
1,863,624 - A4249_RS09315 0.17 +1.3
1,863,675 - A4249_RS09315 0.22 +0.4
1,863,702 + A4249_RS09315 0.25 +0.7
1,863,702 + A4249_RS09315 0.25 +1.1
1,863,794 + A4249_RS09315 0.34 +0.4
1,863,794 + A4249_RS09315 0.34 +1.2
1,863,795 - A4249_RS09315 0.34 +0.2
1,863,795 - A4249_RS09315 0.34 +2.2
1,863,968 + A4249_RS09315 0.52 -0.1
1,863,969 - A4249_RS09315 0.52 +0.3
1,863,978 - A4249_RS09315 0.53 -0.3
1,863,978 - A4249_RS09315 0.53 -1.4
1,863,978 - A4249_RS09315 0.53 -1.1
1,864,542 + +0.7
1,864,542 + -0.8
1,864,543 - +0.5
1,864,543 - +0.0
1,864,822 - A4249_RS09320 0.25 +0.2
1,864,925 + A4249_RS09320 0.35 +0.7
1,864,925 + A4249_RS09320 0.35 -0.1
1,864,926 - A4249_RS09320 0.35 -0.8
1,864,926 - A4249_RS09320 0.35 -0.2
1,865,114 + A4249_RS09320 0.53 -1.5
1,865,114 + A4249_RS09320 0.53 +0.1
1,865,115 - A4249_RS09320 0.53 -0.3
1,865,115 - A4249_RS09320 0.53 +0.1
1,865,231 + A4249_RS09320 0.64 +0.8
1,865,232 - A4249_RS09320 0.64 -0.7
1,865,321 + A4249_RS09320 0.73 +0.7
1,865,321 + A4249_RS09320 0.73 +0.9
1,865,322 - A4249_RS09320 0.73 -0.4
1,865,322 - A4249_RS09320 0.73 -0.4
1,865,322 - A4249_RS09320 0.73 +0.3
1,865,322 - A4249_RS09320 0.73 -0.0
1,865,322 - A4249_RS09320 0.73 -0.6
1,865,358 + A4249_RS09320 0.76 -0.2
1,865,358 + A4249_RS09320 0.76 -0.4
1,865,358 + A4249_RS09320 0.76 -0.3
1,865,358 + A4249_RS09320 0.76 +0.2
1,865,358 + A4249_RS09320 0.76 +0.2
1,865,359 - A4249_RS09320 0.77 -0.7
1,865,359 - A4249_RS09320 0.77 +0.8
1,865,359 - A4249_RS09320 0.77 +0.6
1,865,359 - A4249_RS09320 0.77 +0.7
1,865,359 - A4249_RS09320 0.77 +0.1
1,865,359 - A4249_RS09320 0.77 -0.4

Or see this region's nucleotide sequence