Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08745

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08735 and A4249_RS08740 are separated by 61 nucleotidesA4249_RS08740 and A4249_RS08745 are separated by 77 nucleotidesA4249_RS08745 and A4249_RS08750 are separated by 60 nucleotides A4249_RS08735: A4249_RS08735 - helix-turn-helix transcriptional regulator, at 1,753,163 to 1,753,798 _RS08735 A4249_RS08740: A4249_RS08740 - SH3 domain-containing protein, at 1,753,860 to 1,754,333 _RS08740 A4249_RS08745: A4249_RS08745 - hypothetical protein, at 1,754,411 to 1,754,800 _RS08745 A4249_RS08750: A4249_RS08750 - lysine--tRNA ligase, at 1,754,861 to 1,756,543 _RS08750 Position (kb) 1754 1755Strain fitness (log2 ratio) -1 0 1at 1753.796 kb on + strandat 1753.796 kb on + strandat 1753.876 kb on + strandat 1753.876 kb on + strandat 1753.876 kb on + strandat 1753.876 kb on + strandat 1753.876 kb on + strandat 1753.877 kb on - strandat 1753.877 kb on - strandat 1753.877 kb on - strandat 1753.877 kb on - strandat 1753.877 kb on - strandat 1753.978 kb on + strand, within A4249_RS08740at 1753.978 kb on + strand, within A4249_RS08740at 1753.979 kb on - strand, within A4249_RS08740at 1753.979 kb on - strand, within A4249_RS08740at 1753.979 kb on - strand, within A4249_RS08740at 1754.040 kb on - strand, within A4249_RS08740at 1754.083 kb on + strand, within A4249_RS08740at 1754.083 kb on + strand, within A4249_RS08740at 1754.083 kb on + strand, within A4249_RS08740at 1754.083 kb on + strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.084 kb on - strand, within A4249_RS08740at 1754.132 kb on + strand, within A4249_RS08740at 1754.132 kb on + strand, within A4249_RS08740at 1754.132 kb on + strand, within A4249_RS08740at 1754.133 kb on - strand, within A4249_RS08740at 1754.333 kb on + strandat 1754.333 kb on + strandat 1754.333 kb on + strandat 1754.333 kb on + strandat 1754.333 kb on + strandat 1754.333 kb on + strandat 1754.334 kb on - strandat 1754.334 kb on - strandat 1754.334 kb on - strandat 1754.334 kb on - strandat 1754.334 kb on - strandat 1754.334 kb on - strandat 1754.334 kb on - strandat 1754.432 kb on + strandat 1754.695 kb on + strand, within A4249_RS08745at 1754.695 kb on + strand, within A4249_RS08745at 1754.696 kb on - strand, within A4249_RS08745at 1754.696 kb on - strand, within A4249_RS08745at 1754.696 kb on - strand, within A4249_RS08745at 1754.696 kb on - strand, within A4249_RS08745at 1754.818 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,753,796 + -0.3
1,753,796 + -0.5
1,753,876 + +0.0
1,753,876 + +0.1
1,753,876 + -1.2
1,753,876 + -0.1
1,753,876 + -0.6
1,753,877 - +0.2
1,753,877 - +0.2
1,753,877 - -0.1
1,753,877 - -0.5
1,753,877 - -0.1
1,753,978 + A4249_RS08740 0.25 -0.1
1,753,978 + A4249_RS08740 0.25 -0.5
1,753,979 - A4249_RS08740 0.25 +0.2
1,753,979 - A4249_RS08740 0.25 +0.1
1,753,979 - A4249_RS08740 0.25 +0.2
1,754,040 - A4249_RS08740 0.38 +0.0
1,754,083 + A4249_RS08740 0.47 -0.5
1,754,083 + A4249_RS08740 0.47 -0.2
1,754,083 + A4249_RS08740 0.47 -0.2
1,754,083 + A4249_RS08740 0.47 -0.1
1,754,084 - A4249_RS08740 0.47 -0.3
1,754,084 - A4249_RS08740 0.47 -0.2
1,754,084 - A4249_RS08740 0.47 +0.3
1,754,084 - A4249_RS08740 0.47 -0.6
1,754,084 - A4249_RS08740 0.47 -0.3
1,754,084 - A4249_RS08740 0.47 +0.8
1,754,132 + A4249_RS08740 0.57 +0.3
1,754,132 + A4249_RS08740 0.57 +0.6
1,754,132 + A4249_RS08740 0.57 +0.6
1,754,133 - A4249_RS08740 0.58 -0.1
1,754,333 + -0.1
1,754,333 + +0.4
1,754,333 + -0.2
1,754,333 + -1.0
1,754,333 + +0.5
1,754,333 + -1.5
1,754,334 - +0.3
1,754,334 - -0.2
1,754,334 - -0.2
1,754,334 - +0.0
1,754,334 - -0.7
1,754,334 - -0.3
1,754,334 - -0.0
1,754,432 + -0.0
1,754,695 + A4249_RS08745 0.73 -1.3
1,754,695 + A4249_RS08745 0.73 -0.4
1,754,696 - A4249_RS08745 0.73 +0.7
1,754,696 - A4249_RS08745 0.73 -0.2
1,754,696 - A4249_RS08745 0.73 -0.3
1,754,696 - A4249_RS08745 0.73 -0.2
1,754,818 - -0.5

Or see this region's nucleotide sequence