Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08720

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08710 and A4249_RS08715 are separated by 46 nucleotidesA4249_RS08715 and A4249_RS08720 overlap by 4 nucleotidesA4249_RS08720 and A4249_RS08725 are separated by 176 nucleotidesA4249_RS08725 and A4249_RS08730 are separated by 91 nucleotides A4249_RS08710: A4249_RS08710 - ligase-associated DNA damage response exonuclease, at 1,750,100 to 1,751,131 _RS08710 A4249_RS08715: A4249_RS08715 - PaaI family thioesterase, at 1,751,178 to 1,751,678 _RS08715 A4249_RS08720: A4249_RS08720 - PaaI family thioesterase, at 1,751,675 to 1,752,070 _RS08720 A4249_RS08725: A4249_RS08725 - hypothetical protein, at 1,752,247 to 1,752,588 _RS08725 A4249_RS08730: A4249_RS08730 - hypothetical protein, at 1,752,680 to 1,753,120 _RS08730 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -3 -2 -1 0 1at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.780 kb on + strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.781 kb on - strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.782 kb on + strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.783 kb on - strand, within A4249_RS08710at 1750.902 kb on + strand, within A4249_RS08710at 1750.903 kb on - strand, within A4249_RS08710at 1751.064 kb on + strandat 1751.064 kb on + strandat 1751.064 kb on + strandat 1751.064 kb on + strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.065 kb on - strandat 1751.085 kb on + strandat 1751.086 kb on - strandat 1751.086 kb on - strandat 1751.324 kb on + strand, within A4249_RS08715at 1751.325 kb on - strand, within A4249_RS08715at 1751.325 kb on - strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.484 kb on + strand, within A4249_RS08715at 1751.485 kb on - strand, within A4249_RS08715at 1751.485 kb on - strand, within A4249_RS08715at 1751.485 kb on - strand, within A4249_RS08715at 1751.485 kb on - strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.622 kb on + strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.623 kb on - strand, within A4249_RS08715at 1751.624 kb on + strand, within A4249_RS08715at 1751.624 kb on + strand, within A4249_RS08715at 1751.624 kb on + strand, within A4249_RS08715at 1751.624 kb on + strand, within A4249_RS08715at 1751.625 kb on - strand, within A4249_RS08715at 1751.625 kb on - strand, within A4249_RS08715at 1751.625 kb on - strand, within A4249_RS08715at 1751.703 kb on - strandat 1751.912 kb on + strand, within A4249_RS08720at 1751.913 kb on - strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.025 kb on + strand, within A4249_RS08720at 1752.026 kb on - strand, within A4249_RS08720at 1752.026 kb on - strand, within A4249_RS08720at 1752.037 kb on + strandat 1752.206 kb on + strandat 1752.223 kb on + strandat 1752.224 kb on - strandat 1752.224 kb on - strandat 1752.224 kb on - strandat 1752.224 kb on - strandat 1752.511 kb on + strand, within A4249_RS08725at 1752.511 kb on + strand, within A4249_RS08725at 1752.511 kb on + strand, within A4249_RS08725at 1752.512 kb on - strand, within A4249_RS08725at 1752.512 kb on - strand, within A4249_RS08725at 1752.512 kb on - strand, within A4249_RS08725at 1752.512 kb on - strand, within A4249_RS08725at 1752.512 kb on - strand, within A4249_RS08725at 1752.598 kb on - strandat 1752.629 kb on + strandat 1752.630 kb on - strandat 1752.630 kb on - strandat 1752.689 kb on - strandat 1752.689 kb on - strandat 1752.703 kb on + strandat 1752.704 kb on - strandat 1752.735 kb on + strand, within A4249_RS08730at 1752.771 kb on + strand, within A4249_RS08730at 1752.771 kb on + strand, within A4249_RS08730at 1752.771 kb on + strand, within A4249_RS08730at 1752.771 kb on + strand, within A4249_RS08730at 1752.772 kb on - strand, within A4249_RS08730at 1752.785 kb on + strand, within A4249_RS08730at 1752.786 kb on - strand, within A4249_RS08730at 1752.786 kb on - strand, within A4249_RS08730at 1752.786 kb on - strand, within A4249_RS08730at 1752.942 kb on + strand, within A4249_RS08730at 1752.942 kb on + strand, within A4249_RS08730at 1752.942 kb on + strand, within A4249_RS08730at 1752.942 kb on + strand, within A4249_RS08730at 1752.942 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.967 kb on + strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.968 kb on - strand, within A4249_RS08730at 1752.979 kb on + strand, within A4249_RS08730at 1752.979 kb on + strand, within A4249_RS08730at 1752.980 kb on - strand, within A4249_RS08730at 1752.980 kb on - strand, within A4249_RS08730at 1753.010 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.012 kb on + strand, within A4249_RS08730at 1753.013 kb on - strand, within A4249_RS08730at 1753.013 kb on - strand, within A4249_RS08730at 1753.013 kb on - strand, within A4249_RS08730at 1753.013 kb on - strand, within A4249_RS08730at 1753.013 kb on - strand, within A4249_RS08730at 1753.034 kb on + strand, within A4249_RS08730at 1753.034 kb on + strand, within A4249_RS08730at 1753.035 kb on - strand, within A4249_RS08730at 1753.035 kb on - strand, within A4249_RS08730at 1753.035 kb on - strand, within A4249_RS08730at 1753.035 kb on - strand, within A4249_RS08730at 1753.035 kb on - strand, within A4249_RS08730at 1753.039 kb on + strand, within A4249_RS08730at 1753.039 kb on + strand, within A4249_RS08730at 1753.059 kb on + strand, within A4249_RS08730at 1753.059 kb on + strand, within A4249_RS08730at 1753.059 kb on + strand, within A4249_RS08730at 1753.059 kb on + strand, within A4249_RS08730at 1753.060 kb on - strand, within A4249_RS08730at 1753.060 kb on - strand, within A4249_RS08730at 1753.070 kb on + strand, within A4249_RS08730at 1753.070 kb on + strand, within A4249_RS08730at 1753.070 kb on + strand, within A4249_RS08730

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,750,780 + A4249_RS08710 0.66 -0.3
1,750,780 + A4249_RS08710 0.66 +1.3
1,750,780 + A4249_RS08710 0.66 +0.7
1,750,780 + A4249_RS08710 0.66 +0.6
1,750,780 + A4249_RS08710 0.66 +0.2
1,750,780 + A4249_RS08710 0.66 -0.2
1,750,780 + A4249_RS08710 0.66 -0.0
1,750,780 + A4249_RS08710 0.66 +1.0
1,750,780 + A4249_RS08710 0.66 -0.9
1,750,781 - A4249_RS08710 0.66 +0.1
1,750,781 - A4249_RS08710 0.66 -0.8
1,750,781 - A4249_RS08710 0.66 -0.0
1,750,781 - A4249_RS08710 0.66 -0.5
1,750,782 + A4249_RS08710 0.66 -0.4
1,750,782 + A4249_RS08710 0.66 +0.6
1,750,782 + A4249_RS08710 0.66 -0.0
1,750,782 + A4249_RS08710 0.66 -1.2
1,750,782 + A4249_RS08710 0.66 -0.0
1,750,782 + A4249_RS08710 0.66 -0.3
1,750,783 - A4249_RS08710 0.66 -0.3
1,750,783 - A4249_RS08710 0.66 +0.1
1,750,783 - A4249_RS08710 0.66 +0.1
1,750,783 - A4249_RS08710 0.66 +0.6
1,750,783 - A4249_RS08710 0.66 -1.0
1,750,783 - A4249_RS08710 0.66 -0.8
1,750,783 - A4249_RS08710 0.66 -0.8
1,750,902 + A4249_RS08710 0.78 +0.6
1,750,903 - A4249_RS08710 0.78 -0.9
1,751,064 + -0.2
1,751,064 + -0.8
1,751,064 + +0.0
1,751,064 + +0.7
1,751,065 - +0.2
1,751,065 - -1.0
1,751,065 - -0.2
1,751,065 - -0.1
1,751,065 - -0.2
1,751,065 - +0.3
1,751,085 + +0.2
1,751,086 - -0.3
1,751,086 - +0.3
1,751,324 + A4249_RS08715 0.29 -0.0
1,751,325 - A4249_RS08715 0.29 -0.1
1,751,325 - A4249_RS08715 0.29 +0.7
1,751,484 + A4249_RS08715 0.61 -0.5
1,751,484 + A4249_RS08715 0.61 +0.1
1,751,484 + A4249_RS08715 0.61 -1.3
1,751,484 + A4249_RS08715 0.61 -0.2
1,751,484 + A4249_RS08715 0.61 -0.1
1,751,484 + A4249_RS08715 0.61 -0.6
1,751,484 + A4249_RS08715 0.61 -0.0
1,751,484 + A4249_RS08715 0.61 +0.1
1,751,485 - A4249_RS08715 0.61 +0.4
1,751,485 - A4249_RS08715 0.61 -0.7
1,751,485 - A4249_RS08715 0.61 -0.7
1,751,485 - A4249_RS08715 0.61 -0.2
1,751,622 + A4249_RS08715 0.89 +1.1
1,751,622 + A4249_RS08715 0.89 +0.0
1,751,622 + A4249_RS08715 0.89 -1.0
1,751,622 + A4249_RS08715 0.89 -0.8
1,751,622 + A4249_RS08715 0.89 +0.1
1,751,622 + A4249_RS08715 0.89 -0.1
1,751,622 + A4249_RS08715 0.89 +0.6
1,751,622 + A4249_RS08715 0.89 +0.2
1,751,622 + A4249_RS08715 0.89 +0.3
1,751,622 + A4249_RS08715 0.89 -0.4
1,751,623 - A4249_RS08715 0.89 -0.3
1,751,623 - A4249_RS08715 0.89 -0.2
1,751,623 - A4249_RS08715 0.89 +0.1
1,751,623 - A4249_RS08715 0.89 -0.0
1,751,623 - A4249_RS08715 0.89 -0.2
1,751,623 - A4249_RS08715 0.89 +0.6
1,751,623 - A4249_RS08715 0.89 -0.2
1,751,623 - A4249_RS08715 0.89 -0.4
1,751,623 - A4249_RS08715 0.89 -1.1
1,751,624 + A4249_RS08715 0.89 -0.6
1,751,624 + A4249_RS08715 0.89 -0.1
1,751,624 + A4249_RS08715 0.89 -0.7
1,751,624 + A4249_RS08715 0.89 -0.4
1,751,625 - A4249_RS08715 0.89 +0.7
1,751,625 - A4249_RS08715 0.89 -0.2
1,751,625 - A4249_RS08715 0.89 -1.2
1,751,703 - -0.5
1,751,912 + A4249_RS08720 0.60 +0.6
1,751,913 - A4249_RS08720 0.60 -0.6
1,752,025 + A4249_RS08720 0.88 -0.3
1,752,025 + A4249_RS08720 0.88 -0.3
1,752,025 + A4249_RS08720 0.88 -0.3
1,752,025 + A4249_RS08720 0.88 +0.3
1,752,025 + A4249_RS08720 0.88 +1.5
1,752,025 + A4249_RS08720 0.88 -0.6
1,752,025 + A4249_RS08720 0.88 -0.3
1,752,026 - A4249_RS08720 0.89 +0.8
1,752,026 - A4249_RS08720 0.89 +0.1
1,752,037 + +0.7
1,752,206 + -0.8
1,752,223 + -1.3
1,752,224 - -1.4
1,752,224 - -0.3
1,752,224 - +0.0
1,752,224 - -0.3
1,752,511 + A4249_RS08725 0.77 +0.5
1,752,511 + A4249_RS08725 0.77 -0.1
1,752,511 + A4249_RS08725 0.77 -0.3
1,752,512 - A4249_RS08725 0.77 +0.4
1,752,512 - A4249_RS08725 0.77 -1.0
1,752,512 - A4249_RS08725 0.77 -1.0
1,752,512 - A4249_RS08725 0.77 +0.0
1,752,512 - A4249_RS08725 0.77 -0.9
1,752,598 - -0.9
1,752,629 + -0.1
1,752,630 - -0.8
1,752,630 - -0.3
1,752,689 - -0.2
1,752,689 - -0.5
1,752,703 + -0.3
1,752,704 - +0.5
1,752,735 + A4249_RS08730 0.12 -0.4
1,752,771 + A4249_RS08730 0.21 +0.2
1,752,771 + A4249_RS08730 0.21 +0.3
1,752,771 + A4249_RS08730 0.21 -0.1
1,752,771 + A4249_RS08730 0.21 -0.2
1,752,772 - A4249_RS08730 0.21 +0.1
1,752,785 + A4249_RS08730 0.24 -0.1
1,752,786 - A4249_RS08730 0.24 -2.0
1,752,786 - A4249_RS08730 0.24 +0.7
1,752,786 - A4249_RS08730 0.24 -1.2
1,752,942 + A4249_RS08730 0.59 +0.1
1,752,942 + A4249_RS08730 0.59 -0.8
1,752,942 + A4249_RS08730 0.59 +0.5
1,752,942 + A4249_RS08730 0.59 -0.2
1,752,942 + A4249_RS08730 0.59 -1.1
1,752,967 + A4249_RS08730 0.65 +0.2
1,752,967 + A4249_RS08730 0.65 -0.6
1,752,967 + A4249_RS08730 0.65 +0.1
1,752,967 + A4249_RS08730 0.65 +0.2
1,752,967 + A4249_RS08730 0.65 -0.9
1,752,967 + A4249_RS08730 0.65 -2.0
1,752,968 - A4249_RS08730 0.65 +0.4
1,752,968 - A4249_RS08730 0.65 +0.2
1,752,968 - A4249_RS08730 0.65 -1.7
1,752,968 - A4249_RS08730 0.65 -0.7
1,752,968 - A4249_RS08730 0.65 -0.5
1,752,968 - A4249_RS08730 0.65 +0.7
1,752,979 + A4249_RS08730 0.68 +0.6
1,752,979 + A4249_RS08730 0.68 -0.5
1,752,980 - A4249_RS08730 0.68 +1.0
1,752,980 - A4249_RS08730 0.68 -0.4
1,753,010 + A4249_RS08730 0.75 -0.0
1,753,012 + A4249_RS08730 0.75 +0.0
1,753,012 + A4249_RS08730 0.75 -0.1
1,753,012 + A4249_RS08730 0.75 -0.9
1,753,012 + A4249_RS08730 0.75 -0.4
1,753,012 + A4249_RS08730 0.75 -0.3
1,753,012 + A4249_RS08730 0.75 -1.1
1,753,013 - A4249_RS08730 0.76 -0.5
1,753,013 - A4249_RS08730 0.76 -0.5
1,753,013 - A4249_RS08730 0.76 -1.3
1,753,013 - A4249_RS08730 0.76 -0.7
1,753,013 - A4249_RS08730 0.76 -0.2
1,753,034 + A4249_RS08730 0.80 -0.2
1,753,034 + A4249_RS08730 0.80 -0.2
1,753,035 - A4249_RS08730 0.80 -0.6
1,753,035 - A4249_RS08730 0.80 -0.3
1,753,035 - A4249_RS08730 0.80 -1.3
1,753,035 - A4249_RS08730 0.80 -2.8
1,753,035 - A4249_RS08730 0.80 -0.2
1,753,039 + A4249_RS08730 0.81 -1.3
1,753,039 + A4249_RS08730 0.81 -0.3
1,753,059 + A4249_RS08730 0.86 -0.2
1,753,059 + A4249_RS08730 0.86 -1.1
1,753,059 + A4249_RS08730 0.86 -0.4
1,753,059 + A4249_RS08730 0.86 -0.7
1,753,060 - A4249_RS08730 0.86 -0.0
1,753,060 - A4249_RS08730 0.86 +0.0
1,753,070 + A4249_RS08730 0.88 +0.3
1,753,070 + A4249_RS08730 0.88 -2.3
1,753,070 + A4249_RS08730 0.88 -1.0

Or see this region's nucleotide sequence