Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08595

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08585 and A4249_RS08590 overlap by 4 nucleotidesA4249_RS08590 and A4249_RS08595 are separated by 12 nucleotidesA4249_RS08595 and A4249_RS08600 overlap by 4 nucleotides A4249_RS08585: A4249_RS08585 - ABC-type transport auxiliary lipoprotein family protein, at 1,721,956 to 1,722,606 _RS08585 A4249_RS08590: A4249_RS08590 - MlaD family protein, at 1,722,603 to 1,723,541 _RS08590 A4249_RS08595: A4249_RS08595 - ABC transporter ATP-binding protein, at 1,723,554 to 1,724,330 _RS08595 A4249_RS08600: A4249_RS08600 - ABC transporter permease, at 1,724,327 to 1,725,442 _RS08600 Position (kb) 1723 1724 1725Strain fitness (log2 ratio) -1 0 1 2at 1722.644 kb on + strandat 1722.866 kb on + strand, within A4249_RS08590at 1722.867 kb on - strand, within A4249_RS08590at 1722.867 kb on - strand, within A4249_RS08590at 1722.867 kb on - strand, within A4249_RS08590at 1722.904 kb on + strand, within A4249_RS08590at 1722.904 kb on + strand, within A4249_RS08590at 1723.163 kb on - strand, within A4249_RS08590at 1723.213 kb on + strand, within A4249_RS08590at 1723.213 kb on + strand, within A4249_RS08590at 1723.213 kb on + strand, within A4249_RS08590at 1723.213 kb on + strand, within A4249_RS08590at 1723.214 kb on - strand, within A4249_RS08590at 1723.214 kb on - strand, within A4249_RS08590at 1723.408 kb on + strand, within A4249_RS08590at 1723.408 kb on + strand, within A4249_RS08590at 1723.408 kb on + strand, within A4249_RS08590at 1723.408 kb on + strand, within A4249_RS08590at 1723.409 kb on - strand, within A4249_RS08590at 1723.409 kb on - strand, within A4249_RS08590at 1723.409 kb on - strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.423 kb on + strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.424 kb on - strand, within A4249_RS08590at 1723.432 kb on + strand, within A4249_RS08590at 1723.433 kb on - strand, within A4249_RS08590at 1723.522 kb on + strandat 1723.523 kb on - strandat 1723.523 kb on - strandat 1723.523 kb on - strandat 1723.702 kb on + strand, within A4249_RS08595at 1723.702 kb on + strand, within A4249_RS08595at 1723.703 kb on - strand, within A4249_RS08595at 1723.703 kb on - strand, within A4249_RS08595at 1723.966 kb on + strand, within A4249_RS08595at 1723.966 kb on + strand, within A4249_RS08595at 1723.966 kb on + strand, within A4249_RS08595at 1723.967 kb on - strand, within A4249_RS08595at 1723.967 kb on - strand, within A4249_RS08595at 1723.967 kb on - strand, within A4249_RS08595at 1723.967 kb on - strand, within A4249_RS08595at 1723.970 kb on + strand, within A4249_RS08595at 1723.970 kb on + strand, within A4249_RS08595at 1723.971 kb on - strand, within A4249_RS08595at 1724.123 kb on - strand, within A4249_RS08595at 1724.330 kb on + strandat 1724.330 kb on + strandat 1724.330 kb on + strandat 1724.330 kb on + strandat 1724.331 kb on - strandat 1724.331 kb on - strandat 1724.331 kb on - strandat 1724.331 kb on - strandat 1724.331 kb on - strandat 1724.331 kb on - strandat 1724.636 kb on - strand, within A4249_RS08600at 1724.636 kb on - strand, within A4249_RS08600at 1725.090 kb on + strand, within A4249_RS08600at 1725.090 kb on + strand, within A4249_RS08600at 1725.090 kb on + strand, within A4249_RS08600at 1725.186 kb on + strand, within A4249_RS08600at 1725.186 kb on + strand, within A4249_RS08600at 1725.186 kb on + strand, within A4249_RS08600at 1725.186 kb on + strand, within A4249_RS08600at 1725.187 kb on - strand, within A4249_RS08600at 1725.187 kb on - strand, within A4249_RS08600at 1725.187 kb on - strand, within A4249_RS08600at 1725.187 kb on - strand, within A4249_RS08600at 1725.187 kb on - strand, within A4249_RS08600

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,722,644 + +1.5
1,722,866 + A4249_RS08590 0.28 -0.9
1,722,867 - A4249_RS08590 0.28 +0.6
1,722,867 - A4249_RS08590 0.28 +0.6
1,722,867 - A4249_RS08590 0.28 -0.7
1,722,904 + A4249_RS08590 0.32 +0.6
1,722,904 + A4249_RS08590 0.32 +0.5
1,723,163 - A4249_RS08590 0.60 +0.5
1,723,213 + A4249_RS08590 0.65 +1.4
1,723,213 + A4249_RS08590 0.65 +0.9
1,723,213 + A4249_RS08590 0.65 +0.1
1,723,213 + A4249_RS08590 0.65 +0.9
1,723,214 - A4249_RS08590 0.65 +1.5
1,723,214 - A4249_RS08590 0.65 -0.8
1,723,408 + A4249_RS08590 0.86 +0.1
1,723,408 + A4249_RS08590 0.86 -0.4
1,723,408 + A4249_RS08590 0.86 +0.3
1,723,408 + A4249_RS08590 0.86 -0.1
1,723,409 - A4249_RS08590 0.86 +0.6
1,723,409 - A4249_RS08590 0.86 +0.4
1,723,409 - A4249_RS08590 0.86 +0.3
1,723,423 + A4249_RS08590 0.87 -0.7
1,723,423 + A4249_RS08590 0.87 +0.2
1,723,423 + A4249_RS08590 0.87 -1.2
1,723,423 + A4249_RS08590 0.87 -1.5
1,723,423 + A4249_RS08590 0.87 +0.2
1,723,423 + A4249_RS08590 0.87 +0.6
1,723,424 - A4249_RS08590 0.87 +0.4
1,723,424 - A4249_RS08590 0.87 +0.5
1,723,424 - A4249_RS08590 0.87 +0.8
1,723,424 - A4249_RS08590 0.87 +0.2
1,723,424 - A4249_RS08590 0.87 +1.1
1,723,424 - A4249_RS08590 0.87 +0.1
1,723,424 - A4249_RS08590 0.87 -0.9
1,723,424 - A4249_RS08590 0.87 -1.2
1,723,432 + A4249_RS08590 0.88 +0.8
1,723,433 - A4249_RS08590 0.88 +0.1
1,723,522 + +1.1
1,723,523 - +0.9
1,723,523 - -1.5
1,723,523 - +1.8
1,723,702 + A4249_RS08595 0.19 +1.0
1,723,702 + A4249_RS08595 0.19 -0.3
1,723,703 - A4249_RS08595 0.19 -0.7
1,723,703 - A4249_RS08595 0.19 +0.2
1,723,966 + A4249_RS08595 0.53 +0.4
1,723,966 + A4249_RS08595 0.53 -0.1
1,723,966 + A4249_RS08595 0.53 -0.2
1,723,967 - A4249_RS08595 0.53 -1.2
1,723,967 - A4249_RS08595 0.53 +1.0
1,723,967 - A4249_RS08595 0.53 +0.1
1,723,967 - A4249_RS08595 0.53 +0.5
1,723,970 + A4249_RS08595 0.54 +0.8
1,723,970 + A4249_RS08595 0.54 +0.4
1,723,971 - A4249_RS08595 0.54 +1.2
1,724,123 - A4249_RS08595 0.73 +0.1
1,724,330 + -0.7
1,724,330 + -0.1
1,724,330 + +0.6
1,724,330 + +0.9
1,724,331 - +0.5
1,724,331 - -0.2
1,724,331 - -0.6
1,724,331 - -1.1
1,724,331 - +0.1
1,724,331 - +0.1
1,724,636 - A4249_RS08600 0.28 +0.4
1,724,636 - A4249_RS08600 0.28 -0.3
1,725,090 + A4249_RS08600 0.68 +0.2
1,725,090 + A4249_RS08600 0.68 -0.8
1,725,090 + A4249_RS08600 0.68 -1.4
1,725,186 + A4249_RS08600 0.77 +0.6
1,725,186 + A4249_RS08600 0.77 +0.2
1,725,186 + A4249_RS08600 0.77 -0.4
1,725,186 + A4249_RS08600 0.77 +2.0
1,725,187 - A4249_RS08600 0.77 -0.7
1,725,187 - A4249_RS08600 0.77 -0.3
1,725,187 - A4249_RS08600 0.77 +0.2
1,725,187 - A4249_RS08600 0.77 +0.2
1,725,187 - A4249_RS08600 0.77 +2.2

Or see this region's nucleotide sequence