Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08310

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08295 and A4249_RS08300 are separated by 176 nucleotidesA4249_RS08300 and A4249_RS08305 are separated by 51 nucleotidesA4249_RS08305 and A4249_RS08310 are separated by 23 nucleotidesA4249_RS08310 and A4249_RS08315 are separated by 2 nucleotides A4249_RS08295: A4249_RS08295 - TorF family putative porin, at 1,666,832 to 1,667,548 _RS08295 A4249_RS08300: A4249_RS08300 - cold-shock protein, at 1,667,725 to 1,667,937 _RS08300 A4249_RS08305: A4249_RS08305 - hypothetical protein, at 1,667,989 to 1,668,183 _RS08305 A4249_RS08310: A4249_RS08310 - hypothetical protein, at 1,668,207 to 1,668,464 _RS08310 A4249_RS08315: A4249_RS08315 - cystathionine gamma-synthase, at 1,668,467 to 1,669,630 _RS08315 Position (kb) 1668 1669Strain fitness (log2 ratio) -1 0 1at 1667.279 kb on + strand, within A4249_RS08295at 1667.280 kb on - strand, within A4249_RS08295at 1667.409 kb on - strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.435 kb on + strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.436 kb on - strand, within A4249_RS08295at 1667.471 kb on + strand, within A4249_RS08295at 1667.471 kb on + strand, within A4249_RS08295at 1667.471 kb on + strand, within A4249_RS08295at 1667.474 kb on + strand, within A4249_RS08295at 1667.474 kb on + strand, within A4249_RS08295at 1667.474 kb on + strand, within A4249_RS08295at 1667.475 kb on - strand, within A4249_RS08295at 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.507 kb on + strandat 1667.508 kb on - strandat 1667.508 kb on - strandat 1667.508 kb on - strandat 1667.508 kb on - strandat 1667.565 kb on + strandat 1667.587 kb on + strandat 1667.587 kb on + strandat 1667.587 kb on + strandat 1667.587 kb on + strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.588 kb on - strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.741 kb on + strandat 1667.742 kb on - strandat 1667.742 kb on - strandat 1667.742 kb on - strandat 1667.742 kb on - strandat 1667.749 kb on + strand, within A4249_RS08300at 1667.750 kb on - strand, within A4249_RS08300at 1667.750 kb on - strand, within A4249_RS08300at 1667.923 kb on - strandat 1667.936 kb on - strandat 1667.936 kb on - strandat 1667.936 kb on - strandat 1668.466 kb on - strandat 1668.466 kb on - strandat 1668.649 kb on + strand, within A4249_RS08315at 1668.650 kb on - strand, within A4249_RS08315at 1668.786 kb on + strand, within A4249_RS08315at 1668.786 kb on + strand, within A4249_RS08315at 1668.786 kb on + strand, within A4249_RS08315at 1668.787 kb on - strand, within A4249_RS08315at 1668.787 kb on - strand, within A4249_RS08315at 1668.787 kb on - strand, within A4249_RS08315at 1668.787 kb on - strand, within A4249_RS08315at 1668.897 kb on - strand, within A4249_RS08315at 1668.897 kb on - strand, within A4249_RS08315at 1669.020 kb on + strand, within A4249_RS08315at 1669.020 kb on + strand, within A4249_RS08315at 1669.021 kb on - strand, within A4249_RS08315at 1669.021 kb on - strand, within A4249_RS08315at 1669.021 kb on - strand, within A4249_RS08315at 1669.021 kb on - strand, within A4249_RS08315at 1669.021 kb on - strand, within A4249_RS08315at 1669.254 kb on + strand, within A4249_RS08315at 1669.254 kb on + strand, within A4249_RS08315at 1669.254 kb on + strand, within A4249_RS08315at 1669.254 kb on + strand, within A4249_RS08315at 1669.254 kb on + strand, within A4249_RS08315at 1669.255 kb on - strand, within A4249_RS08315at 1669.255 kb on - strand, within A4249_RS08315at 1669.255 kb on - strand, within A4249_RS08315at 1669.255 kb on - strand, within A4249_RS08315at 1669.255 kb on - strand, within A4249_RS08315at 1669.317 kb on + strand, within A4249_RS08315at 1669.318 kb on - strand, within A4249_RS08315at 1669.435 kb on + strand, within A4249_RS08315at 1669.436 kb on - strand, within A4249_RS08315

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,667,279 + A4249_RS08295 0.62 +0.2
1,667,280 - A4249_RS08295 0.62 -0.6
1,667,409 - A4249_RS08295 0.80 -0.5
1,667,435 + A4249_RS08295 0.84 -0.3
1,667,435 + A4249_RS08295 0.84 -1.1
1,667,435 + A4249_RS08295 0.84 +0.1
1,667,435 + A4249_RS08295 0.84 +0.2
1,667,435 + A4249_RS08295 0.84 -0.0
1,667,435 + A4249_RS08295 0.84 -0.1
1,667,436 - A4249_RS08295 0.84 +0.0
1,667,436 - A4249_RS08295 0.84 -0.0
1,667,436 - A4249_RS08295 0.84 -0.7
1,667,436 - A4249_RS08295 0.84 +0.2
1,667,436 - A4249_RS08295 0.84 -0.2
1,667,436 - A4249_RS08295 0.84 +0.6
1,667,436 - A4249_RS08295 0.84 -1.1
1,667,436 - A4249_RS08295 0.84 -0.4
1,667,471 + A4249_RS08295 0.89 -0.2
1,667,471 + A4249_RS08295 0.89 +0.2
1,667,471 + A4249_RS08295 0.89 +0.3
1,667,474 + A4249_RS08295 0.90 -1.2
1,667,474 + A4249_RS08295 0.90 +0.1
1,667,474 + A4249_RS08295 0.90 +0.5
1,667,475 - A4249_RS08295 0.90 -0.6
1,667,507 + -0.7
1,667,507 + +0.5
1,667,507 + +0.1
1,667,507 + +0.3
1,667,507 + -0.1
1,667,507 + -0.1
1,667,507 + -0.2
1,667,508 - -1.3
1,667,508 - +1.2
1,667,508 - +0.4
1,667,508 - -0.6
1,667,565 + -0.8
1,667,587 + -1.6
1,667,587 + +1.6
1,667,587 + +0.6
1,667,587 + +0.4
1,667,588 - -0.6
1,667,588 - +0.3
1,667,588 - +0.1
1,667,588 - +0.1
1,667,588 - +0.3
1,667,588 - +0.0
1,667,588 - +0.4
1,667,741 + -0.5
1,667,741 + -0.6
1,667,741 + -0.4
1,667,741 + -0.5
1,667,741 + -0.2
1,667,742 - +0.9
1,667,742 - +0.3
1,667,742 - +0.2
1,667,742 - +0.3
1,667,749 + A4249_RS08300 0.11 -0.3
1,667,750 - A4249_RS08300 0.12 +0.1
1,667,750 - A4249_RS08300 0.12 -0.9
1,667,923 - -1.4
1,667,936 - -0.3
1,667,936 - -0.5
1,667,936 - +0.2
1,668,466 - -1.4
1,668,466 - +0.3
1,668,649 + A4249_RS08315 0.16 +0.2
1,668,650 - A4249_RS08315 0.16 -0.4
1,668,786 + A4249_RS08315 0.27 -0.2
1,668,786 + A4249_RS08315 0.27 +0.1
1,668,786 + A4249_RS08315 0.27 -0.3
1,668,787 - A4249_RS08315 0.27 +0.4
1,668,787 - A4249_RS08315 0.27 -0.2
1,668,787 - A4249_RS08315 0.27 -0.2
1,668,787 - A4249_RS08315 0.27 +0.0
1,668,897 - A4249_RS08315 0.37 -0.3
1,668,897 - A4249_RS08315 0.37 -1.4
1,669,020 + A4249_RS08315 0.48 -0.1
1,669,020 + A4249_RS08315 0.48 +0.8
1,669,021 - A4249_RS08315 0.48 +0.2
1,669,021 - A4249_RS08315 0.48 -0.5
1,669,021 - A4249_RS08315 0.48 -0.2
1,669,021 - A4249_RS08315 0.48 -1.0
1,669,021 - A4249_RS08315 0.48 +0.0
1,669,254 + A4249_RS08315 0.68 +0.3
1,669,254 + A4249_RS08315 0.68 +0.6
1,669,254 + A4249_RS08315 0.68 -0.4
1,669,254 + A4249_RS08315 0.68 -0.0
1,669,254 + A4249_RS08315 0.68 +0.2
1,669,255 - A4249_RS08315 0.68 -0.5
1,669,255 - A4249_RS08315 0.68 +0.1
1,669,255 - A4249_RS08315 0.68 -0.1
1,669,255 - A4249_RS08315 0.68 +0.8
1,669,255 - A4249_RS08315 0.68 -0.6
1,669,317 + A4249_RS08315 0.73 +0.2
1,669,318 - A4249_RS08315 0.73 -0.4
1,669,435 + A4249_RS08315 0.83 -0.3
1,669,436 - A4249_RS08315 0.83 -0.2

Or see this region's nucleotide sequence