Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS08090

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS08085 and A4249_RS08090 are separated by 340 nucleotidesA4249_RS08090 and A4249_RS16615 are separated by 473 nucleotidesA4249_RS16615 and A4249_RS08095 are separated by 132 nucleotides A4249_RS08085: A4249_RS08085 - DNA-directed RNA polymerase subunit beta, at 1,621,930 to 1,626,045 _RS08085 A4249_RS08090: A4249_RS08090 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 1,626,386 to 1,626,937 _RS08090 A4249_RS16615: A4249_RS16615 - hypothetical protein, at 1,627,411 to 1,627,554 _RS16615 A4249_RS08095: A4249_RS08095 - M61 family metallopeptidase, at 1,627,687 to 1,629,648 _RS08095 Position (kb) 1626 1627Strain fitness (log2 ratio) -2 -1 0 1at 1626.181 kb on - strandat 1626.262 kb on - strandat 1626.262 kb on - strandat 1626.262 kb on - strandat 1626.262 kb on - strandat 1626.262 kb on - strandat 1626.287 kb on - strandat 1626.287 kb on - strandat 1626.287 kb on - strandat 1626.287 kb on - strandat 1626.287 kb on - strandat 1626.287 kb on - strandat 1626.287 kb on - strandat 1626.287 kb on - strandat 1626.289 kb on - strandat 1626.289 kb on - strandat 1626.374 kb on + strandat 1626.374 kb on + strandat 1626.375 kb on - strandat 1626.375 kb on - strandat 1626.375 kb on - strandat 1626.375 kb on - strandat 1626.375 kb on - strandat 1626.386 kb on - strandat 1626.386 kb on - strandat 1626.386 kb on - strandat 1626.386 kb on - strandat 1626.386 kb on - strandat 1626.461 kb on + strand, within A4249_RS08090at 1626.461 kb on + strand, within A4249_RS08090at 1626.461 kb on + strand, within A4249_RS08090at 1626.461 kb on + strand, within A4249_RS08090at 1626.461 kb on + strand, within A4249_RS08090at 1626.461 kb on + strand, within A4249_RS08090at 1626.462 kb on - strand, within A4249_RS08090at 1626.462 kb on - strand, within A4249_RS08090at 1626.462 kb on - strand, within A4249_RS08090at 1626.462 kb on - strand, within A4249_RS08090at 1626.462 kb on - strand, within A4249_RS08090at 1626.462 kb on - strand, within A4249_RS08090at 1626.560 kb on + strand, within A4249_RS08090at 1626.560 kb on + strand, within A4249_RS08090at 1626.617 kb on + strand, within A4249_RS08090at 1626.728 kb on + strand, within A4249_RS08090at 1626.728 kb on + strand, within A4249_RS08090at 1626.728 kb on + strand, within A4249_RS08090at 1626.728 kb on + strand, within A4249_RS08090at 1626.729 kb on - strand, within A4249_RS08090at 1626.729 kb on - strand, within A4249_RS08090at 1626.729 kb on - strand, within A4249_RS08090at 1626.818 kb on + strand, within A4249_RS08090at 1626.849 kb on - strand, within A4249_RS08090at 1626.976 kb on + strandat 1626.977 kb on - strandat 1626.977 kb on - strandat 1627.000 kb on + strandat 1627.000 kb on + strandat 1627.000 kb on + strandat 1627.157 kb on + strandat 1627.157 kb on + strandat 1627.158 kb on - strandat 1627.158 kb on - strandat 1627.158 kb on - strandat 1627.158 kb on - strandat 1627.158 kb on - strandat 1627.295 kb on + strandat 1627.295 kb on + strandat 1627.295 kb on + strandat 1627.295 kb on + strandat 1627.295 kb on + strandat 1627.471 kb on + strand, within A4249_RS16615at 1627.475 kb on - strand, within A4249_RS16615at 1627.733 kb on + strandat 1627.733 kb on + strandat 1627.733 kb on + strandat 1627.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,626,181 - -0.3
1,626,262 - +0.3
1,626,262 - +0.4
1,626,262 - -0.3
1,626,262 - -0.1
1,626,262 - -1.9
1,626,287 - +0.1
1,626,287 - -0.4
1,626,287 - -0.2
1,626,287 - +1.2
1,626,287 - -0.1
1,626,287 - +0.2
1,626,287 - -0.3
1,626,287 - +0.3
1,626,289 - -0.8
1,626,289 - -0.1
1,626,374 + +0.2
1,626,374 + -1.1
1,626,375 - +0.4
1,626,375 - -0.7
1,626,375 - +1.1
1,626,375 - +0.1
1,626,375 - -0.1
1,626,386 - +0.3
1,626,386 - -0.3
1,626,386 - -0.1
1,626,386 - -0.2
1,626,386 - +0.5
1,626,461 + A4249_RS08090 0.14 -1.4
1,626,461 + A4249_RS08090 0.14 -0.5
1,626,461 + A4249_RS08090 0.14 -0.1
1,626,461 + A4249_RS08090 0.14 +0.0
1,626,461 + A4249_RS08090 0.14 -0.6
1,626,461 + A4249_RS08090 0.14 -0.4
1,626,462 - A4249_RS08090 0.14 +0.7
1,626,462 - A4249_RS08090 0.14 -0.1
1,626,462 - A4249_RS08090 0.14 +0.6
1,626,462 - A4249_RS08090 0.14 +0.2
1,626,462 - A4249_RS08090 0.14 -0.1
1,626,462 - A4249_RS08090 0.14 -0.1
1,626,560 + A4249_RS08090 0.32 -1.3
1,626,560 + A4249_RS08090 0.32 +0.5
1,626,617 + A4249_RS08090 0.42 -0.0
1,626,728 + A4249_RS08090 0.62 -0.3
1,626,728 + A4249_RS08090 0.62 -0.2
1,626,728 + A4249_RS08090 0.62 -0.0
1,626,728 + A4249_RS08090 0.62 +0.4
1,626,729 - A4249_RS08090 0.62 -1.7
1,626,729 - A4249_RS08090 0.62 -0.6
1,626,729 - A4249_RS08090 0.62 -0.4
1,626,818 + A4249_RS08090 0.78 -0.4
1,626,849 - A4249_RS08090 0.84 -0.2
1,626,976 + +0.3
1,626,977 - -1.5
1,626,977 - +0.7
1,627,000 + -0.0
1,627,000 + +0.1
1,627,000 + +0.2
1,627,157 + +0.0
1,627,157 + -0.1
1,627,158 - +0.5
1,627,158 - +0.2
1,627,158 - +0.8
1,627,158 - -0.1
1,627,158 - -0.8
1,627,295 + -0.9
1,627,295 + -0.4
1,627,295 + -0.3
1,627,295 + +0.6
1,627,295 + +0.1
1,627,471 + A4249_RS16615 0.42 -0.2
1,627,475 - A4249_RS16615 0.44 -0.2
1,627,733 + +0.4
1,627,733 + +0.5
1,627,733 + -0.3
1,627,734 - -0.3

Or see this region's nucleotide sequence