Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07980

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07975 and A4249_RS07980 are separated by 115 nucleotidesA4249_RS07980 and A4249_RS07985 overlap by 4 nucleotidesA4249_RS07985 and A4249_RS07990 are separated by 0 nucleotidesA4249_RS07990 and A4249_RS07995 are separated by 350 nucleotides A4249_RS07975: A4249_RS07975 - thiazole synthase, at 1,598,211 to 1,598,993 _RS07975 A4249_RS07980: A4249_RS07980 - type II toxin-antitoxin system prevent-host-death family antitoxin, at 1,599,109 to 1,599,354 _RS07980 A4249_RS07985: A4249_RS07985 - type II toxin-antitoxin system VapC family toxin, at 1,599,351 to 1,599,737 _RS07985 A4249_RS07990: A4249_RS07990 - sulfur carrier protein ThiS, at 1,599,738 to 1,599,938 _RS07990 A4249_RS07995: A4249_RS07995 - type II 3-dehydroquinate dehydratase, at 1,600,289 to 1,600,735 _RS07995 Position (kb) 1599 1600Strain fitness (log2 ratio) -2 -1 0 1at 1598.114 kb on + strandat 1598.114 kb on + strandat 1598.114 kb on + strandat 1598.114 kb on + strandat 1598.114 kb on + strandat 1598.114 kb on + strandat 1598.114 kb on + strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.115 kb on - strandat 1598.118 kb on + strandat 1598.119 kb on - strandat 1598.119 kb on - strandat 1598.119 kb on - strandat 1598.119 kb on - strandat 1598.119 kb on - strandat 1598.183 kb on + strandat 1598.183 kb on + strandat 1598.183 kb on + strandat 1598.183 kb on + strandat 1598.184 kb on - strandat 1598.184 kb on - strandat 1598.184 kb on - strandat 1598.212 kb on + strandat 1598.212 kb on + strandat 1598.212 kb on + strandat 1598.212 kb on + strandat 1598.213 kb on - strandat 1598.213 kb on - strandat 1598.213 kb on - strandat 1598.213 kb on - strandat 1599.364 kb on + strandat 1599.364 kb on + strandat 1599.364 kb on + strandat 1599.364 kb on + strandat 1599.364 kb on + strandat 1599.365 kb on - strandat 1599.365 kb on - strandat 1599.365 kb on - strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.368 kb on + strandat 1599.369 kb on - strandat 1599.369 kb on - strandat 1599.369 kb on - strandat 1599.369 kb on - strandat 1599.369 kb on - strandat 1599.369 kb on - strandat 1599.475 kb on + strand, within A4249_RS07985at 1599.476 kb on - strand, within A4249_RS07985at 1599.543 kb on + strand, within A4249_RS07985at 1599.543 kb on + strand, within A4249_RS07985at 1599.544 kb on - strand, within A4249_RS07985at 1599.544 kb on - strand, within A4249_RS07985at 1599.565 kb on - strand, within A4249_RS07985at 1599.650 kb on - strand, within A4249_RS07985at 1599.711 kb on + strandat 1599.711 kb on + strandat 1599.711 kb on + strandat 1599.712 kb on - strandat 1599.712 kb on - strandat 1599.712 kb on - strandat 1599.984 kb on + strandat 1599.984 kb on + strandat 1599.984 kb on + strandat 1599.985 kb on - strandat 1599.985 kb on - strandat 1600.188 kb on + strandat 1600.188 kb on + strandat 1600.188 kb on + strandat 1600.188 kb on + strandat 1600.188 kb on + strandat 1600.189 kb on - strandat 1600.189 kb on - strandat 1600.242 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,598,114 + -0.0
1,598,114 + -0.5
1,598,114 + -0.0
1,598,114 + -0.1
1,598,114 + +0.4
1,598,114 + -0.7
1,598,114 + -0.1
1,598,115 - -0.2
1,598,115 - -0.6
1,598,115 - +0.2
1,598,115 - -1.5
1,598,115 - -1.1
1,598,115 - +0.4
1,598,115 - +0.6
1,598,115 - -0.9
1,598,115 - +0.2
1,598,115 - +0.3
1,598,115 - -1.0
1,598,115 - +0.2
1,598,115 - -1.5
1,598,115 - -0.7
1,598,118 + -0.7
1,598,119 - +0.2
1,598,119 - -0.8
1,598,119 - +0.3
1,598,119 - +0.7
1,598,119 - +0.1
1,598,183 + -0.6
1,598,183 + +0.5
1,598,183 + +0.3
1,598,183 + -0.5
1,598,184 - +0.1
1,598,184 - -0.6
1,598,184 - +0.1
1,598,212 + -0.4
1,598,212 + +0.3
1,598,212 + -0.2
1,598,212 + +0.1
1,598,213 - +0.8
1,598,213 - +1.4
1,598,213 - +1.2
1,598,213 - -0.1
1,599,364 + +0.1
1,599,364 + -0.3
1,599,364 + -1.9
1,599,364 + -0.1
1,599,364 + +0.3
1,599,365 - +0.5
1,599,365 - -0.3
1,599,365 - -0.3
1,599,368 + -0.1
1,599,368 + -0.5
1,599,368 + +0.5
1,599,368 + -0.8
1,599,368 + +0.1
1,599,368 + +1.3
1,599,368 + +0.5
1,599,369 - -0.8
1,599,369 - -0.9
1,599,369 - +0.4
1,599,369 - +1.5
1,599,369 - -0.1
1,599,369 - +0.2
1,599,475 + A4249_RS07985 0.32 -0.1
1,599,476 - A4249_RS07985 0.32 +0.3
1,599,543 + A4249_RS07985 0.50 -0.8
1,599,543 + A4249_RS07985 0.50 +0.6
1,599,544 - A4249_RS07985 0.50 -0.0
1,599,544 - A4249_RS07985 0.50 -1.3
1,599,565 - A4249_RS07985 0.55 -0.5
1,599,650 - A4249_RS07985 0.77 -0.2
1,599,711 + +0.1
1,599,711 + +1.1
1,599,711 + -0.1
1,599,712 - -0.7
1,599,712 - +0.1
1,599,712 - +0.3
1,599,984 + +0.3
1,599,984 + -0.3
1,599,984 + -0.3
1,599,985 - -0.5
1,599,985 - -0.0
1,600,188 + +0.0
1,600,188 + +0.6
1,600,188 + -0.3
1,600,188 + +0.3
1,600,188 + -1.0
1,600,189 - -1.5
1,600,189 - -0.3
1,600,242 + +0.2

Or see this region's nucleotide sequence