Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06140

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS06135 and A4249_RS06140 are separated by 122 nucleotidesA4249_RS06140 and A4249_RS06145 are separated by 64 nucleotidesA4249_RS06145 and A4249_RS06150 are separated by 140 nucleotides A4249_RS06135: A4249_RS06135 - CTP synthase, at 1,247,878 to 1,249,530 _RS06135 A4249_RS06140: A4249_RS06140 - preprotein translocase subunit SecG, at 1,249,653 to 1,250,084 _RS06140 A4249_RS06145: A4249_RS06145 - triose-phosphate isomerase, at 1,250,149 to 1,250,901 _RS06145 A4249_RS06150: A4249_RS06150 - peptidylprolyl isomerase, at 1,251,042 to 1,252,949 _RS06150 Position (kb) 1249 1250 1251Strain fitness (log2 ratio) -2 -1 0 1at 1249.544 kb on - strandat 1249.654 kb on + strandat 1249.655 kb on - strandat 1249.655 kb on - strandat 1249.655 kb on - strandat 1249.655 kb on - strandat 1250.122 kb on - strandat 1250.913 kb on + strandat 1250.913 kb on + strandat 1250.914 kb on - strandat 1250.914 kb on - strandat 1250.996 kb on + strandat 1250.996 kb on + strandat 1250.996 kb on + strandat 1250.996 kb on + strandat 1250.998 kb on + strandat 1250.998 kb on + strandat 1250.998 kb on + strandat 1250.998 kb on + strandat 1250.998 kb on + strandat 1251.018 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,249,544 - -0.5
1,249,654 + -0.4
1,249,655 - -0.8
1,249,655 - +0.1
1,249,655 - -0.1
1,249,655 - +0.6
1,250,122 - -0.4
1,250,913 + +0.2
1,250,913 + +0.2
1,250,914 - -0.1
1,250,914 - +1.4
1,250,996 + +0.8
1,250,996 + +0.6
1,250,996 + +0.2
1,250,996 + +0.3
1,250,998 + -2.1
1,250,998 + -1.1
1,250,998 + +0.9
1,250,998 + -0.2
1,250,998 + +1.6
1,251,018 + +0.1

Or see this region's nucleotide sequence