Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05690

Experiment: Adenine 0.74 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS05685 and A4249_RS05690 overlap by 4 nucleotidesA4249_RS05690 and A4249_RS05695 are separated by 824 nucleotides A4249_RS05685: A4249_RS05685 - error-prone DNA polymerase, at 1,162,519 to 1,165,872 _RS05685 A4249_RS05690: A4249_RS05690 - DNA polymerase Y family protein, at 1,165,869 to 1,167,455 _RS05690 A4249_RS05695: A4249_RS05695 - zinc-binding dehydrogenase, at 1,168,280 to 1,169,407 _RS05695 Position (kb) 1165 1166 1167 1168Strain fitness (log2 ratio) -1 0 1 2at 1164.971 kb on + strand, within A4249_RS05685at 1164.971 kb on + strand, within A4249_RS05685at 1164.971 kb on + strand, within A4249_RS05685at 1164.971 kb on + strand, within A4249_RS05685at 1164.972 kb on - strand, within A4249_RS05685at 1164.972 kb on - strand, within A4249_RS05685at 1165.143 kb on + strand, within A4249_RS05685at 1165.143 kb on + strand, within A4249_RS05685at 1165.143 kb on + strand, within A4249_RS05685at 1165.143 kb on + strand, within A4249_RS05685at 1165.143 kb on + strand, within A4249_RS05685at 1165.143 kb on + strand, within A4249_RS05685at 1165.144 kb on - strand, within A4249_RS05685at 1165.144 kb on - strand, within A4249_RS05685at 1165.144 kb on - strand, within A4249_RS05685at 1165.187 kb on + strand, within A4249_RS05685at 1165.187 kb on + strand, within A4249_RS05685at 1165.187 kb on + strand, within A4249_RS05685at 1165.187 kb on + strand, within A4249_RS05685at 1165.188 kb on - strand, within A4249_RS05685at 1165.211 kb on - strand, within A4249_RS05685at 1165.354 kb on + strand, within A4249_RS05685at 1165.355 kb on - strand, within A4249_RS05685at 1165.505 kb on + strand, within A4249_RS05685at 1165.558 kb on + strandat 1165.558 kb on + strandat 1165.559 kb on - strandat 1165.559 kb on - strandat 1165.578 kb on + strandat 1165.579 kb on - strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.628 kb on + strandat 1165.629 kb on - strandat 1165.629 kb on - strandat 1165.629 kb on - strandat 1165.629 kb on - strandat 1165.629 kb on - strandat 1165.629 kb on - strandat 1165.629 kb on - strandat 1165.629 kb on - strandat 1165.629 kb on - strandat 1165.629 kb on - strandat 1165.819 kb on + strandat 1165.820 kb on - strandat 1165.856 kb on + strandat 1165.856 kb on + strandat 1165.857 kb on - strandat 1165.918 kb on + strandat 1165.918 kb on + strandat 1165.919 kb on - strandat 1165.919 kb on - strandat 1165.919 kb on - strandat 1165.972 kb on + strandat 1165.972 kb on + strandat 1165.975 kb on + strandat 1165.975 kb on + strandat 1165.975 kb on + strandat 1165.975 kb on + strandat 1165.975 kb on + strandat 1165.976 kb on - strandat 1165.976 kb on - strandat 1166.546 kb on - strand, within A4249_RS05690at 1166.546 kb on - strand, within A4249_RS05690at 1166.652 kb on + strand, within A4249_RS05690at 1166.652 kb on + strand, within A4249_RS05690at 1166.653 kb on - strand, within A4249_RS05690at 1166.653 kb on - strand, within A4249_RS05690at 1166.865 kb on + strand, within A4249_RS05690at 1166.865 kb on + strand, within A4249_RS05690at 1166.865 kb on + strand, within A4249_RS05690at 1166.866 kb on - strand, within A4249_RS05690at 1167.173 kb on + strand, within A4249_RS05690at 1167.173 kb on + strand, within A4249_RS05690at 1167.173 kb on + strand, within A4249_RS05690at 1167.174 kb on - strand, within A4249_RS05690at 1167.367 kb on - strandat 1167.411 kb on + strandat 1167.411 kb on + strandat 1167.411 kb on + strandat 1167.421 kb on + strandat 1167.513 kb on + strandat 1167.513 kb on + strandat 1167.513 kb on + strandat 1167.514 kb on - strandat 1167.514 kb on - strandat 1167.514 kb on - strandat 1167.514 kb on - strandat 1167.721 kb on - strandat 1168.003 kb on - strandat 1168.003 kb on - strandat 1168.096 kb on + strandat 1168.096 kb on + strandat 1168.096 kb on + strandat 1168.097 kb on - strandat 1168.097 kb on - strandat 1168.097 kb on - strandat 1168.097 kb on - strandat 1168.098 kb on + strandat 1168.098 kb on + strandat 1168.098 kb on + strandat 1168.098 kb on + strandat 1168.098 kb on + strandat 1168.098 kb on + strandat 1168.098 kb on + strandat 1168.098 kb on + strandat 1168.099 kb on - strandat 1168.099 kb on - strandat 1168.099 kb on - strandat 1168.099 kb on - strandat 1168.099 kb on - strandat 1168.099 kb on - strandat 1168.099 kb on - strandat 1168.099 kb on - strandat 1168.099 kb on - strandat 1168.099 kb on - strandat 1168.142 kb on + strandat 1168.143 kb on - strandat 1168.143 kb on - strandat 1168.143 kb on - strandat 1168.168 kb on + strandat 1168.168 kb on + strandat 1168.168 kb on + strandat 1168.169 kb on - strandat 1168.169 kb on - strandat 1168.169 kb on - strandat 1168.169 kb on - strandat 1168.169 kb on - strandat 1168.169 kb on - strandat 1168.169 kb on - strandat 1168.169 kb on - strandat 1168.269 kb on + strandat 1168.270 kb on - strandat 1168.270 kb on - strandat 1168.302 kb on + strandat 1168.302 kb on + strandat 1168.303 kb on - strandat 1168.332 kb on + strandat 1168.332 kb on + strandat 1168.332 kb on + strandat 1168.332 kb on + strandat 1168.332 kb on + strandat 1168.333 kb on - strandat 1168.333 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
remove
1,164,971 + A4249_RS05685 0.73 +0.1
1,164,971 + A4249_RS05685 0.73 -0.4
1,164,971 + A4249_RS05685 0.73 -0.1
1,164,971 + A4249_RS05685 0.73 +0.2
1,164,972 - A4249_RS05685 0.73 -0.2
1,164,972 - A4249_RS05685 0.73 -0.6
1,165,143 + A4249_RS05685 0.78 +1.8
1,165,143 + A4249_RS05685 0.78 +0.1
1,165,143 + A4249_RS05685 0.78 -0.4
1,165,143 + A4249_RS05685 0.78 -0.3
1,165,143 + A4249_RS05685 0.78 -0.2
1,165,143 + A4249_RS05685 0.78 -0.4
1,165,144 - A4249_RS05685 0.78 -0.5
1,165,144 - A4249_RS05685 0.78 +0.4
1,165,144 - A4249_RS05685 0.78 +1.3
1,165,187 + A4249_RS05685 0.80 -0.1
1,165,187 + A4249_RS05685 0.80 +0.4
1,165,187 + A4249_RS05685 0.80 -0.1
1,165,187 + A4249_RS05685 0.80 -0.7
1,165,188 - A4249_RS05685 0.80 +0.4
1,165,211 - A4249_RS05685 0.80 -0.1
1,165,354 + A4249_RS05685 0.85 -0.4
1,165,355 - A4249_RS05685 0.85 -0.1
1,165,505 + A4249_RS05685 0.89 +0.2
1,165,558 + -0.4
1,165,558 + -0.5
1,165,559 - -0.1
1,165,559 - +0.3
1,165,578 + -0.4
1,165,579 - +1.0
1,165,628 + -0.1
1,165,628 + +0.1
1,165,628 + -1.1
1,165,628 + -0.2
1,165,628 + +0.4
1,165,628 + -0.2
1,165,628 + +0.1
1,165,628 + -1.3
1,165,628 + -0.9
1,165,628 + -0.3
1,165,628 + +0.9
1,165,628 + +1.6
1,165,628 + +0.6
1,165,628 + +0.0
1,165,628 + -0.9
1,165,628 + +0.1
1,165,629 - +0.3
1,165,629 - +0.1
1,165,629 - +0.0
1,165,629 - -0.5
1,165,629 - +0.6
1,165,629 - -0.1
1,165,629 - -0.0
1,165,629 - -0.5
1,165,629 - +1.1
1,165,629 - +0.1
1,165,819 + -0.8
1,165,820 - -0.0
1,165,856 + -0.1
1,165,856 + +0.2
1,165,857 - -0.5
1,165,918 + -0.4
1,165,918 + +1.0
1,165,919 - -0.0
1,165,919 - -0.2
1,165,919 - -1.0
1,165,972 + +0.0
1,165,972 + +0.2
1,165,975 + -0.7
1,165,975 + +0.5
1,165,975 + -0.3
1,165,975 + +0.2
1,165,975 + +0.4
1,165,976 - +0.9
1,165,976 - +0.6
1,166,546 - A4249_RS05690 0.43 +0.9
1,166,546 - A4249_RS05690 0.43 +1.2
1,166,652 + A4249_RS05690 0.49 -0.3
1,166,652 + A4249_RS05690 0.49 -0.3
1,166,653 - A4249_RS05690 0.49 +1.4
1,166,653 - A4249_RS05690 0.49 -0.0
1,166,865 + A4249_RS05690 0.63 -0.3
1,166,865 + A4249_RS05690 0.63 -0.2
1,166,865 + A4249_RS05690 0.63 -1.0
1,166,866 - A4249_RS05690 0.63 +0.2
1,167,173 + A4249_RS05690 0.82 +0.1
1,167,173 + A4249_RS05690 0.82 -0.7
1,167,173 + A4249_RS05690 0.82 -0.6
1,167,174 - A4249_RS05690 0.82 -1.0
1,167,367 - -0.7
1,167,411 + +0.3
1,167,411 + +0.2
1,167,411 + -0.3
1,167,421 + -0.0
1,167,513 + -0.1
1,167,513 + +0.6
1,167,513 + +0.0
1,167,514 - +2.0
1,167,514 - +0.1
1,167,514 - -0.3
1,167,514 - -0.6
1,167,721 - -0.3
1,168,003 - -0.6
1,168,003 - +0.2
1,168,096 + -0.4
1,168,096 + +0.3
1,168,096 + -0.5
1,168,097 - -0.0
1,168,097 - +0.1
1,168,097 - -1.2
1,168,097 - -0.3
1,168,098 + +0.4
1,168,098 + -0.9
1,168,098 + -0.1
1,168,098 + +0.9
1,168,098 + +0.6
1,168,098 + -0.0
1,168,098 + -0.0
1,168,098 + -0.5
1,168,099 - -0.3
1,168,099 - -0.4
1,168,099 - +0.5
1,168,099 - -0.2
1,168,099 - +0.4
1,168,099 - +0.1
1,168,099 - -0.0
1,168,099 - +0.3
1,168,099 - +0.6
1,168,099 - -0.7
1,168,142 + -0.2
1,168,143 - -0.9
1,168,143 - +0.7
1,168,143 - -0.9
1,168,168 + -0.4
1,168,168 + -0.4
1,168,168 + -0.4
1,168,169 - -0.3
1,168,169 - -0.4
1,168,169 - -0.8
1,168,169 - -0.7
1,168,169 - -0.5
1,168,169 - -0.1
1,168,169 - +0.3
1,168,169 - -0.3
1,168,269 + +0.5
1,168,270 - -0.6
1,168,270 - +1.0
1,168,302 + -0.5
1,168,302 + +0.4
1,168,303 - -0.3
1,168,332 + -0.1
1,168,332 + +0.0
1,168,332 + +0.4
1,168,332 + +0.6
1,168,332 + -0.2
1,168,333 - +0.5
1,168,333 - +0.0

Or see this region's nucleotide sequence