Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05455

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS05445 and A4249_RS05450 are separated by 204 nucleotidesA4249_RS05450 and A4249_RS05455 overlap by 4 nucleotidesA4249_RS05455 and A4249_RS05460 overlap by 4 nucleotidesA4249_RS05460 and A4249_RS05465 overlap by 4 nucleotides A4249_RS05445: A4249_RS05445 - glycosyltransferase family 2 protein, at 1,113,271 to 1,114,587 _RS05445 A4249_RS05450: A4249_RS05450 - TetR/AcrR family transcriptional regulator, at 1,114,792 to 1,115,421 _RS05450 A4249_RS05455: A4249_RS05455 - ABC transporter substrate-binding protein, at 1,115,418 to 1,116,218 _RS05455 A4249_RS05460: A4249_RS05460 - iron ABC transporter permease, at 1,116,215 to 1,117,204 _RS05460 A4249_RS05465: A4249_RS05465 - ABC transporter ATP-binding protein, at 1,117,201 to 1,117,956 _RS05465 Position (kb) 1115 1116 1117Strain fitness (log2 ratio) -2 -1 0 1 2at 1114.575 kb on + strandat 1114.575 kb on + strandat 1114.576 kb on - strandat 1114.576 kb on - strandat 1114.576 kb on - strandat 1114.576 kb on - strandat 1114.903 kb on + strand, within A4249_RS05450at 1114.963 kb on + strand, within A4249_RS05450at 1114.963 kb on + strand, within A4249_RS05450at 1114.963 kb on + strand, within A4249_RS05450at 1114.963 kb on + strand, within A4249_RS05450at 1114.963 kb on + strand, within A4249_RS05450at 1114.963 kb on + strand, within A4249_RS05450at 1114.963 kb on + strand, within A4249_RS05450at 1114.963 kb on + strand, within A4249_RS05450at 1114.964 kb on - strand, within A4249_RS05450at 1114.964 kb on - strand, within A4249_RS05450at 1114.964 kb on - strand, within A4249_RS05450at 1114.964 kb on - strand, within A4249_RS05450at 1114.964 kb on - strand, within A4249_RS05450at 1114.964 kb on - strand, within A4249_RS05450at 1114.964 kb on - strand, within A4249_RS05450at 1115.101 kb on + strand, within A4249_RS05450at 1115.101 kb on + strand, within A4249_RS05450at 1115.101 kb on + strand, within A4249_RS05450at 1115.101 kb on + strand, within A4249_RS05450at 1115.101 kb on + strand, within A4249_RS05450at 1115.101 kb on + strand, within A4249_RS05450at 1115.102 kb on - strand, within A4249_RS05450at 1115.146 kb on + strand, within A4249_RS05450at 1115.146 kb on + strand, within A4249_RS05450at 1115.146 kb on + strand, within A4249_RS05450at 1115.146 kb on + strand, within A4249_RS05450at 1115.146 kb on + strand, within A4249_RS05450at 1115.146 kb on + strand, within A4249_RS05450at 1115.147 kb on - strand, within A4249_RS05450at 1115.147 kb on - strand, within A4249_RS05450at 1115.147 kb on - strand, within A4249_RS05450at 1115.147 kb on - strand, within A4249_RS05450at 1115.147 kb on - strand, within A4249_RS05450at 1115.147 kb on - strand, within A4249_RS05450at 1115.344 kb on + strand, within A4249_RS05450at 1115.344 kb on + strand, within A4249_RS05450at 1115.344 kb on + strand, within A4249_RS05450at 1115.344 kb on + strand, within A4249_RS05450at 1115.345 kb on - strand, within A4249_RS05450at 1115.396 kb on + strandat 1115.397 kb on - strandat 1115.397 kb on - strandat 1115.397 kb on - strandat 1115.397 kb on - strandat 1115.426 kb on + strandat 1115.426 kb on + strandat 1115.426 kb on + strandat 1115.426 kb on + strandat 1115.427 kb on - strandat 1115.427 kb on - strandat 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.520 kb on + strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.521 kb on - strand, within A4249_RS05455at 1115.695 kb on + strand, within A4249_RS05455at 1115.695 kb on + strand, within A4249_RS05455at 1115.696 kb on - strand, within A4249_RS05455at 1115.764 kb on + strand, within A4249_RS05455at 1115.764 kb on + strand, within A4249_RS05455at 1115.764 kb on + strand, within A4249_RS05455at 1115.765 kb on - strand, within A4249_RS05455at 1115.765 kb on - strand, within A4249_RS05455at 1115.765 kb on - strand, within A4249_RS05455at 1115.825 kb on - strand, within A4249_RS05455at 1115.825 kb on - strand, within A4249_RS05455at 1115.825 kb on - strand, within A4249_RS05455at 1115.898 kb on + strand, within A4249_RS05455at 1115.898 kb on + strand, within A4249_RS05455at 1115.898 kb on + strand, within A4249_RS05455at 1115.898 kb on + strand, within A4249_RS05455at 1115.898 kb on + strand, within A4249_RS05455at 1115.899 kb on - strand, within A4249_RS05455at 1115.899 kb on - strand, within A4249_RS05455at 1115.899 kb on - strand, within A4249_RS05455at 1115.899 kb on - strand, within A4249_RS05455at 1115.970 kb on - strand, within A4249_RS05455at 1116.317 kb on + strand, within A4249_RS05460at 1116.317 kb on + strand, within A4249_RS05460at 1116.318 kb on - strand, within A4249_RS05460at 1116.318 kb on - strand, within A4249_RS05460at 1116.318 kb on - strand, within A4249_RS05460at 1116.454 kb on + strand, within A4249_RS05460at 1116.843 kb on + strand, within A4249_RS05460at 1116.843 kb on + strand, within A4249_RS05460at 1116.843 kb on + strand, within A4249_RS05460at 1116.892 kb on + strand, within A4249_RS05460at 1116.892 kb on + strand, within A4249_RS05460at 1116.892 kb on + strand, within A4249_RS05460at 1116.893 kb on - strand, within A4249_RS05460

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,114,575 + +0.3
1,114,575 + -0.4
1,114,576 - +0.6
1,114,576 - -1.2
1,114,576 - +0.8
1,114,576 - +0.5
1,114,903 + A4249_RS05450 0.18 -0.1
1,114,963 + A4249_RS05450 0.27 -0.1
1,114,963 + A4249_RS05450 0.27 -0.1
1,114,963 + A4249_RS05450 0.27 +0.3
1,114,963 + A4249_RS05450 0.27 -0.2
1,114,963 + A4249_RS05450 0.27 -0.1
1,114,963 + A4249_RS05450 0.27 -0.9
1,114,963 + A4249_RS05450 0.27 -0.3
1,114,963 + A4249_RS05450 0.27 -0.1
1,114,964 - A4249_RS05450 0.27 -0.1
1,114,964 - A4249_RS05450 0.27 +0.3
1,114,964 - A4249_RS05450 0.27 -0.2
1,114,964 - A4249_RS05450 0.27 -1.2
1,114,964 - A4249_RS05450 0.27 +0.4
1,114,964 - A4249_RS05450 0.27 -0.0
1,114,964 - A4249_RS05450 0.27 -0.3
1,115,101 + A4249_RS05450 0.49 +0.3
1,115,101 + A4249_RS05450 0.49 -0.2
1,115,101 + A4249_RS05450 0.49 -0.2
1,115,101 + A4249_RS05450 0.49 -0.2
1,115,101 + A4249_RS05450 0.49 +0.3
1,115,101 + A4249_RS05450 0.49 +0.2
1,115,102 - A4249_RS05450 0.49 -0.2
1,115,146 + A4249_RS05450 0.56 +0.0
1,115,146 + A4249_RS05450 0.56 +0.1
1,115,146 + A4249_RS05450 0.56 -0.7
1,115,146 + A4249_RS05450 0.56 -0.2
1,115,146 + A4249_RS05450 0.56 +0.4
1,115,146 + A4249_RS05450 0.56 -0.3
1,115,147 - A4249_RS05450 0.56 -0.1
1,115,147 - A4249_RS05450 0.56 +0.5
1,115,147 - A4249_RS05450 0.56 -0.2
1,115,147 - A4249_RS05450 0.56 -1.3
1,115,147 - A4249_RS05450 0.56 -0.5
1,115,147 - A4249_RS05450 0.56 +0.3
1,115,344 + A4249_RS05450 0.88 -0.2
1,115,344 + A4249_RS05450 0.88 +0.6
1,115,344 + A4249_RS05450 0.88 -0.5
1,115,344 + A4249_RS05450 0.88 -0.1
1,115,345 - A4249_RS05450 0.88 -0.0
1,115,396 + -0.9
1,115,397 - -0.5
1,115,397 - +0.1
1,115,397 - -0.4
1,115,397 - +0.4
1,115,426 + -0.5
1,115,426 + -0.1
1,115,426 + +0.6
1,115,426 + -0.3
1,115,427 - -2.2
1,115,427 - +1.2
1,115,520 + A4249_RS05455 0.13 -1.3
1,115,520 + A4249_RS05455 0.13 +0.4
1,115,520 + A4249_RS05455 0.13 -1.4
1,115,520 + A4249_RS05455 0.13 -0.2
1,115,520 + A4249_RS05455 0.13 -1.2
1,115,520 + A4249_RS05455 0.13 +1.1
1,115,520 + A4249_RS05455 0.13 -0.0
1,115,520 + A4249_RS05455 0.13 -0.1
1,115,520 + A4249_RS05455 0.13 -1.6
1,115,520 + A4249_RS05455 0.13 +1.2
1,115,520 + A4249_RS05455 0.13 +0.7
1,115,520 + A4249_RS05455 0.13 -0.1
1,115,521 - A4249_RS05455 0.13 -1.0
1,115,521 - A4249_RS05455 0.13 -0.2
1,115,521 - A4249_RS05455 0.13 +0.9
1,115,521 - A4249_RS05455 0.13 -0.0
1,115,521 - A4249_RS05455 0.13 -1.0
1,115,521 - A4249_RS05455 0.13 -0.9
1,115,521 - A4249_RS05455 0.13 -0.0
1,115,521 - A4249_RS05455 0.13 -0.2
1,115,521 - A4249_RS05455 0.13 +0.1
1,115,521 - A4249_RS05455 0.13 -1.2
1,115,521 - A4249_RS05455 0.13 -0.6
1,115,521 - A4249_RS05455 0.13 +0.1
1,115,695 + A4249_RS05455 0.35 -0.1
1,115,695 + A4249_RS05455 0.35 +0.8
1,115,696 - A4249_RS05455 0.35 +0.1
1,115,764 + A4249_RS05455 0.43 +0.8
1,115,764 + A4249_RS05455 0.43 +0.4
1,115,764 + A4249_RS05455 0.43 +0.4
1,115,765 - A4249_RS05455 0.43 +1.2
1,115,765 - A4249_RS05455 0.43 -1.2
1,115,765 - A4249_RS05455 0.43 +0.2
1,115,825 - A4249_RS05455 0.51 +0.7
1,115,825 - A4249_RS05455 0.51 +0.6
1,115,825 - A4249_RS05455 0.51 -0.4
1,115,898 + A4249_RS05455 0.60 -0.9
1,115,898 + A4249_RS05455 0.60 -0.3
1,115,898 + A4249_RS05455 0.60 +0.6
1,115,898 + A4249_RS05455 0.60 +0.0
1,115,898 + A4249_RS05455 0.60 -0.6
1,115,899 - A4249_RS05455 0.60 -1.9
1,115,899 - A4249_RS05455 0.60 +2.4
1,115,899 - A4249_RS05455 0.60 +0.8
1,115,899 - A4249_RS05455 0.60 -0.1
1,115,970 - A4249_RS05455 0.69 +0.1
1,116,317 + A4249_RS05460 0.10 +0.6
1,116,317 + A4249_RS05460 0.10 -0.5
1,116,318 - A4249_RS05460 0.10 -0.2
1,116,318 - A4249_RS05460 0.10 -0.7
1,116,318 - A4249_RS05460 0.10 -1.4
1,116,454 + A4249_RS05460 0.24 +0.3
1,116,843 + A4249_RS05460 0.63 -0.4
1,116,843 + A4249_RS05460 0.63 -1.7
1,116,843 + A4249_RS05460 0.63 -0.5
1,116,892 + A4249_RS05460 0.68 -0.3
1,116,892 + A4249_RS05460 0.68 -1.4
1,116,892 + A4249_RS05460 0.68 -0.7
1,116,893 - A4249_RS05460 0.68 -0.2

Or see this region's nucleotide sequence