Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS05220

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS16755 and A4249_RS05215 are separated by 286 nucleotidesA4249_RS05215 and A4249_RS05220 are separated by 46 nucleotidesA4249_RS05220 and A4249_RS05225 are separated by 150 nucleotides A4249_RS16755: A4249_RS16755 - DUF2252 family protein, at 1,073,298 to 1,073,765 _RS16755 A4249_RS05215: A4249_RS05215 - hypothetical protein, at 1,074,052 to 1,074,690 _RS05215 A4249_RS05220: A4249_RS05220 - hypothetical protein, at 1,074,737 to 1,075,084 _RS05220 A4249_RS05225: A4249_RS05225 - error-prone DNA polymerase, at 1,075,235 to 1,078,489 _RS05225 Position (kb) 1074 1075 1076Strain fitness (log2 ratio) -2 -1 0 1at 1073.742 kb on + strandat 1073.773 kb on + strandat 1073.774 kb on - strandat 1073.774 kb on - strandat 1073.799 kb on + strandat 1073.799 kb on + strandat 1073.799 kb on + strandat 1073.799 kb on + strandat 1073.800 kb on - strandat 1073.800 kb on - strandat 1073.800 kb on - strandat 1073.800 kb on - strandat 1073.875 kb on - strandat 1073.875 kb on - strandat 1074.053 kb on + strandat 1074.053 kb on + strandat 1074.054 kb on - strandat 1074.096 kb on - strandat 1074.096 kb on - strandat 1074.140 kb on + strand, within A4249_RS05215at 1074.141 kb on - strand, within A4249_RS05215at 1074.240 kb on + strand, within A4249_RS05215at 1074.266 kb on + strand, within A4249_RS05215at 1074.267 kb on - strand, within A4249_RS05215at 1074.267 kb on - strand, within A4249_RS05215at 1074.522 kb on + strand, within A4249_RS05215at 1074.523 kb on - strand, within A4249_RS05215at 1074.532 kb on + strand, within A4249_RS05215at 1074.533 kb on - strand, within A4249_RS05215at 1074.574 kb on - strand, within A4249_RS05215at 1074.739 kb on - strandat 1074.762 kb on + strandat 1074.763 kb on - strandat 1074.763 kb on - strandat 1074.818 kb on + strand, within A4249_RS05220at 1074.818 kb on + strand, within A4249_RS05220at 1074.818 kb on + strand, within A4249_RS05220at 1074.818 kb on + strand, within A4249_RS05220at 1074.818 kb on + strand, within A4249_RS05220at 1074.818 kb on + strand, within A4249_RS05220at 1074.819 kb on - strand, within A4249_RS05220at 1074.819 kb on - strand, within A4249_RS05220at 1074.819 kb on - strand, within A4249_RS05220at 1074.819 kb on - strand, within A4249_RS05220at 1074.819 kb on - strand, within A4249_RS05220at 1074.819 kb on - strand, within A4249_RS05220at 1074.858 kb on + strand, within A4249_RS05220at 1074.858 kb on + strand, within A4249_RS05220at 1074.858 kb on + strand, within A4249_RS05220at 1074.858 kb on + strand, within A4249_RS05220at 1074.859 kb on - strand, within A4249_RS05220at 1074.859 kb on - strand, within A4249_RS05220at 1074.859 kb on - strand, within A4249_RS05220at 1074.859 kb on - strand, within A4249_RS05220at 1074.859 kb on - strand, within A4249_RS05220at 1074.859 kb on - strand, within A4249_RS05220at 1074.859 kb on - strand, within A4249_RS05220at 1074.859 kb on - strand, within A4249_RS05220at 1074.859 kb on - strand, within A4249_RS05220at 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.290 kb on + strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.291 kb on - strandat 1075.490 kb on + strandat 1075.490 kb on + strandat 1075.490 kb on + strandat 1075.490 kb on + strandat 1075.490 kb on + strandat 1075.490 kb on + strandat 1075.491 kb on - strandat 1075.491 kb on - strandat 1075.491 kb on - strandat 1075.491 kb on - strandat 1075.491 kb on - strandat 1075.491 kb on - strandat 1075.491 kb on - strandat 1075.491 kb on - strandat 1075.491 kb on - strandat 1075.491 kb on - strandat 1075.536 kb on + strandat 1075.536 kb on + strandat 1075.537 kb on - strandat 1075.770 kb on + strand, within A4249_RS05225at 1075.770 kb on + strand, within A4249_RS05225at 1075.771 kb on - strand, within A4249_RS05225at 1075.771 kb on - strand, within A4249_RS05225at 1075.771 kb on - strand, within A4249_RS05225at 1075.771 kb on - strand, within A4249_RS05225

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,073,742 + -2.0
1,073,773 + -0.5
1,073,774 - -0.0
1,073,774 - -1.3
1,073,799 + -0.2
1,073,799 + +0.2
1,073,799 + +0.4
1,073,799 + +0.4
1,073,800 - +0.3
1,073,800 - -0.3
1,073,800 - +0.3
1,073,800 - -0.6
1,073,875 - +0.7
1,073,875 - -0.0
1,074,053 + -1.0
1,074,053 + +0.1
1,074,054 - -0.0
1,074,096 - +0.5
1,074,096 - -0.0
1,074,140 + A4249_RS05215 0.14 -0.4
1,074,141 - A4249_RS05215 0.14 -0.6
1,074,240 + A4249_RS05215 0.29 +0.6
1,074,266 + A4249_RS05215 0.33 -0.5
1,074,267 - A4249_RS05215 0.34 +0.2
1,074,267 - A4249_RS05215 0.34 -0.4
1,074,522 + A4249_RS05215 0.74 -1.1
1,074,523 - A4249_RS05215 0.74 +0.5
1,074,532 + A4249_RS05215 0.75 +0.2
1,074,533 - A4249_RS05215 0.75 -1.1
1,074,574 - A4249_RS05215 0.82 +0.2
1,074,739 - +0.2
1,074,762 + -0.2
1,074,763 - +0.1
1,074,763 - +0.1
1,074,818 + A4249_RS05220 0.23 -0.1
1,074,818 + A4249_RS05220 0.23 -0.2
1,074,818 + A4249_RS05220 0.23 +1.3
1,074,818 + A4249_RS05220 0.23 -0.5
1,074,818 + A4249_RS05220 0.23 +1.2
1,074,818 + A4249_RS05220 0.23 -0.7
1,074,819 - A4249_RS05220 0.24 +1.0
1,074,819 - A4249_RS05220 0.24 +0.8
1,074,819 - A4249_RS05220 0.24 +0.1
1,074,819 - A4249_RS05220 0.24 -0.5
1,074,819 - A4249_RS05220 0.24 +0.8
1,074,819 - A4249_RS05220 0.24 -0.2
1,074,858 + A4249_RS05220 0.35 -0.2
1,074,858 + A4249_RS05220 0.35 -1.0
1,074,858 + A4249_RS05220 0.35 -0.1
1,074,858 + A4249_RS05220 0.35 -0.7
1,074,859 - A4249_RS05220 0.35 -0.4
1,074,859 - A4249_RS05220 0.35 -0.7
1,074,859 - A4249_RS05220 0.35 -1.2
1,074,859 - A4249_RS05220 0.35 -0.7
1,074,859 - A4249_RS05220 0.35 -0.6
1,074,859 - A4249_RS05220 0.35 -0.6
1,074,859 - A4249_RS05220 0.35 +0.1
1,074,859 - A4249_RS05220 0.35 +0.1
1,074,859 - A4249_RS05220 0.35 +1.2
1,075,290 + -1.0
1,075,290 + +0.2
1,075,290 + +0.5
1,075,290 + +0.0
1,075,290 + -0.1
1,075,290 + -1.2
1,075,290 + -0.3
1,075,290 + -0.2
1,075,290 + -0.0
1,075,290 + -0.2
1,075,290 + -0.3
1,075,290 + -0.0
1,075,290 + -0.5
1,075,290 + +0.3
1,075,291 - -0.2
1,075,291 - +0.1
1,075,291 - +0.2
1,075,291 - -0.1
1,075,291 - -1.0
1,075,291 - +0.1
1,075,291 - -0.6
1,075,291 - -1.0
1,075,291 - -0.3
1,075,291 - -1.6
1,075,291 - +1.0
1,075,291 - -2.1
1,075,291 - +0.4
1,075,291 - +0.1
1,075,291 - -0.5
1,075,291 - -0.1
1,075,291 - +0.4
1,075,291 - -0.0
1,075,291 - +0.1
1,075,291 - -2.6
1,075,291 - -0.2
1,075,490 + -0.3
1,075,490 + +0.0
1,075,490 + +0.4
1,075,490 + +0.7
1,075,490 + -0.3
1,075,490 + -0.3
1,075,491 - -0.6
1,075,491 - -0.6
1,075,491 - -0.1
1,075,491 - -0.0
1,075,491 - -0.4
1,075,491 - +0.9
1,075,491 - -0.1
1,075,491 - +0.9
1,075,491 - +0.4
1,075,491 - -0.6
1,075,536 + -0.3
1,075,536 + +0.0
1,075,537 - +0.6
1,075,770 + A4249_RS05225 0.16 -1.0
1,075,770 + A4249_RS05225 0.16 +0.3
1,075,771 - A4249_RS05225 0.16 +0.6
1,075,771 - A4249_RS05225 0.16 -0.3
1,075,771 - A4249_RS05225 0.16 +0.6
1,075,771 - A4249_RS05225 0.16 +0.9

Or see this region's nucleotide sequence