Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04845

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04840 and A4249_RS04845 are separated by 3 nucleotidesA4249_RS04845 and A4249_RS04850 are separated by 10 nucleotidesA4249_RS04850 and A4249_RS04855 are separated by 26 nucleotides A4249_RS04840: A4249_RS04840 - Na+/H+ antiporter, at 1,009,173 to 1,010,810 _RS04840 A4249_RS04845: A4249_RS04845 - HAD-IA family hydrolase, at 1,010,814 to 1,011,470 _RS04845 A4249_RS04850: A4249_RS04850 - nucleoside triphosphate pyrophosphohydrolase, at 1,011,481 to 1,012,245 _RS04850 A4249_RS04855: A4249_RS04855 - MFS transporter, at 1,012,272 to 1,013,633 _RS04855 Position (kb) 1010 1011 1012Strain fitness (log2 ratio) -2 -1 0 1at 1009.857 kb on + strand, within A4249_RS04840at 1009.857 kb on + strand, within A4249_RS04840at 1009.858 kb on - strand, within A4249_RS04840at 1009.858 kb on - strand, within A4249_RS04840at 1010.124 kb on + strand, within A4249_RS04840at 1010.124 kb on + strand, within A4249_RS04840at 1010.124 kb on + strand, within A4249_RS04840at 1010.124 kb on + strand, within A4249_RS04840at 1010.124 kb on + strand, within A4249_RS04840at 1010.125 kb on - strand, within A4249_RS04840at 1010.125 kb on - strand, within A4249_RS04840at 1010.125 kb on - strand, within A4249_RS04840at 1010.125 kb on - strand, within A4249_RS04840at 1010.125 kb on - strand, within A4249_RS04840at 1010.125 kb on - strand, within A4249_RS04840at 1010.125 kb on - strand, within A4249_RS04840at 1010.125 kb on - strand, within A4249_RS04840at 1010.565 kb on + strand, within A4249_RS04840at 1010.565 kb on + strand, within A4249_RS04840at 1010.566 kb on - strand, within A4249_RS04840at 1010.566 kb on - strand, within A4249_RS04840at 1010.598 kb on + strand, within A4249_RS04840at 1010.599 kb on - strand, within A4249_RS04840at 1010.789 kb on - strandat 1010.802 kb on + strandat 1010.803 kb on - strandat 1010.803 kb on - strandat 1010.845 kb on + strandat 1010.845 kb on + strandat 1010.845 kb on + strandat 1010.846 kb on - strandat 1010.846 kb on - strandat 1010.846 kb on - strandat 1010.846 kb on - strandat 1010.846 kb on - strandat 1010.846 kb on - strandat 1011.077 kb on + strand, within A4249_RS04845at 1011.114 kb on + strand, within A4249_RS04845at 1011.114 kb on + strand, within A4249_RS04845at 1011.114 kb on + strand, within A4249_RS04845at 1011.115 kb on - strand, within A4249_RS04845at 1011.115 kb on - strand, within A4249_RS04845at 1011.115 kb on - strand, within A4249_RS04845at 1011.126 kb on + strand, within A4249_RS04845at 1011.126 kb on + strand, within A4249_RS04845at 1011.335 kb on + strand, within A4249_RS04845at 1011.335 kb on + strand, within A4249_RS04845at 1011.336 kb on - strand, within A4249_RS04845at 1011.336 kb on - strand, within A4249_RS04845at 1011.336 kb on - strand, within A4249_RS04845at 1011.336 kb on - strand, within A4249_RS04845at 1011.338 kb on - strand, within A4249_RS04845at 1011.443 kb on - strandat 1011.443 kb on - strandat 1011.463 kb on + strandat 1011.464 kb on - strandat 1011.610 kb on + strand, within A4249_RS04850at 1011.610 kb on + strand, within A4249_RS04850at 1011.610 kb on + strand, within A4249_RS04850at 1011.610 kb on + strand, within A4249_RS04850at 1011.611 kb on - strand, within A4249_RS04850at 1011.611 kb on - strand, within A4249_RS04850at 1011.611 kb on - strand, within A4249_RS04850at 1011.851 kb on - strand, within A4249_RS04850at 1011.851 kb on - strand, within A4249_RS04850at 1012.042 kb on + strand, within A4249_RS04850at 1012.042 kb on + strand, within A4249_RS04850at 1012.042 kb on + strand, within A4249_RS04850at 1012.042 kb on + strand, within A4249_RS04850at 1012.043 kb on - strand, within A4249_RS04850at 1012.154 kb on + strand, within A4249_RS04850at 1012.154 kb on + strand, within A4249_RS04850at 1012.154 kb on + strand, within A4249_RS04850at 1012.154 kb on + strand, within A4249_RS04850at 1012.155 kb on - strand, within A4249_RS04850at 1012.155 kb on - strand, within A4249_RS04850at 1012.155 kb on - strand, within A4249_RS04850at 1012.155 kb on - strand, within A4249_RS04850at 1012.155 kb on - strand, within A4249_RS04850at 1012.155 kb on - strand, within A4249_RS04850at 1012.155 kb on - strand, within A4249_RS04850at 1012.173 kb on - strandat 1012.343 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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1,009,857 + A4249_RS04840 0.42 -0.5
1,009,857 + A4249_RS04840 0.42 -0.6
1,009,858 - A4249_RS04840 0.42 -0.4
1,009,858 - A4249_RS04840 0.42 +0.6
1,010,124 + A4249_RS04840 0.58 -1.7
1,010,124 + A4249_RS04840 0.58 -2.0
1,010,124 + A4249_RS04840 0.58 -0.0
1,010,124 + A4249_RS04840 0.58 +1.1
1,010,124 + A4249_RS04840 0.58 +0.6
1,010,125 - A4249_RS04840 0.58 -0.6
1,010,125 - A4249_RS04840 0.58 -0.5
1,010,125 - A4249_RS04840 0.58 +0.7
1,010,125 - A4249_RS04840 0.58 -0.9
1,010,125 - A4249_RS04840 0.58 -1.0
1,010,125 - A4249_RS04840 0.58 +0.1
1,010,125 - A4249_RS04840 0.58 -0.1
1,010,125 - A4249_RS04840 0.58 +1.0
1,010,565 + A4249_RS04840 0.85 -0.1
1,010,565 + A4249_RS04840 0.85 +0.8
1,010,566 - A4249_RS04840 0.85 -0.3
1,010,566 - A4249_RS04840 0.85 -0.5
1,010,598 + A4249_RS04840 0.87 +0.9
1,010,599 - A4249_RS04840 0.87 +0.1
1,010,789 - -0.2
1,010,802 + +1.1
1,010,803 - +0.5
1,010,803 - +0.0
1,010,845 + -0.3
1,010,845 + -0.0
1,010,845 + -1.4
1,010,846 - +0.6
1,010,846 - -0.7
1,010,846 - -0.3
1,010,846 - -0.2
1,010,846 - -0.2
1,010,846 - -0.1
1,011,077 + A4249_RS04845 0.40 -0.8
1,011,114 + A4249_RS04845 0.46 -0.0
1,011,114 + A4249_RS04845 0.46 -0.6
1,011,114 + A4249_RS04845 0.46 -0.6
1,011,115 - A4249_RS04845 0.46 -1.0
1,011,115 - A4249_RS04845 0.46 -0.1
1,011,115 - A4249_RS04845 0.46 -0.4
1,011,126 + A4249_RS04845 0.47 -1.2
1,011,126 + A4249_RS04845 0.47 -0.8
1,011,335 + A4249_RS04845 0.79 -0.3
1,011,335 + A4249_RS04845 0.79 -0.3
1,011,336 - A4249_RS04845 0.79 +0.5
1,011,336 - A4249_RS04845 0.79 +0.7
1,011,336 - A4249_RS04845 0.79 -0.0
1,011,336 - A4249_RS04845 0.79 -0.3
1,011,338 - A4249_RS04845 0.80 +1.0
1,011,443 - -0.2
1,011,443 - -0.2
1,011,463 + -0.1
1,011,464 - -1.4
1,011,610 + A4249_RS04850 0.17 +1.2
1,011,610 + A4249_RS04850 0.17 -0.4
1,011,610 + A4249_RS04850 0.17 -0.7
1,011,610 + A4249_RS04850 0.17 -1.4
1,011,611 - A4249_RS04850 0.17 -1.2
1,011,611 - A4249_RS04850 0.17 +0.3
1,011,611 - A4249_RS04850 0.17 +0.1
1,011,851 - A4249_RS04850 0.48 +0.6
1,011,851 - A4249_RS04850 0.48 +0.0
1,012,042 + A4249_RS04850 0.73 -0.0
1,012,042 + A4249_RS04850 0.73 -0.8
1,012,042 + A4249_RS04850 0.73 +0.0
1,012,042 + A4249_RS04850 0.73 -0.8
1,012,043 - A4249_RS04850 0.73 +0.3
1,012,154 + A4249_RS04850 0.88 +0.3
1,012,154 + A4249_RS04850 0.88 -0.9
1,012,154 + A4249_RS04850 0.88 -0.1
1,012,154 + A4249_RS04850 0.88 +0.5
1,012,155 - A4249_RS04850 0.88 -0.5
1,012,155 - A4249_RS04850 0.88 -0.1
1,012,155 - A4249_RS04850 0.88 -1.1
1,012,155 - A4249_RS04850 0.88 -0.2
1,012,155 - A4249_RS04850 0.88 +0.3
1,012,155 - A4249_RS04850 0.88 -0.6
1,012,155 - A4249_RS04850 0.88 -0.4
1,012,173 - -0.5
1,012,343 - -1.3

Or see this region's nucleotide sequence