Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04690

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04680 and A4249_RS04685 are separated by 122 nucleotidesA4249_RS04685 and A4249_RS04690 are separated by 73 nucleotidesA4249_RS04690 and A4249_RS04695 are separated by 220 nucleotides A4249_RS04680: A4249_RS04680 - pyridoxal phosphate-dependent aminotransferase, at 972,220 to 973,425 _RS04680 A4249_RS04685: A4249_RS04685 - VTT domain-containing protein, at 973,548 to 974,261 _RS04685 A4249_RS04690: A4249_RS04690 - hemerythrin domain-containing protein, at 974,335 to 974,790 _RS04690 A4249_RS04695: A4249_RS04695 - rod shape-determining protein, at 975,011 to 976,051 _RS04695 Position (kb) 974 975Strain fitness (log2 ratio) -2 -1 0 1at 973.475 kb on - strandat 973.475 kb on - strandat 973.475 kb on - strandat 973.515 kb on - strandat 973.533 kb on + strandat 973.534 kb on - strandat 973.534 kb on - strandat 973.534 kb on - strandat 973.534 kb on - strandat 973.534 kb on - strandat 973.534 kb on - strandat 973.534 kb on - strandat 973.534 kb on - strandat 973.534 kb on - strandat 973.743 kb on - strand, within A4249_RS04685at 973.839 kb on + strand, within A4249_RS04685at 973.840 kb on - strand, within A4249_RS04685at 973.840 kb on - strand, within A4249_RS04685at 973.840 kb on - strand, within A4249_RS04685at 973.840 kb on - strand, within A4249_RS04685at 973.840 kb on - strand, within A4249_RS04685at 973.878 kb on + strand, within A4249_RS04685at 973.878 kb on + strand, within A4249_RS04685at 973.879 kb on - strand, within A4249_RS04685at 973.879 kb on - strand, within A4249_RS04685at 973.879 kb on - strand, within A4249_RS04685at 973.879 kb on - strand, within A4249_RS04685at 973.879 kb on - strand, within A4249_RS04685at 973.879 kb on - strand, within A4249_RS04685at 973.974 kb on + strand, within A4249_RS04685at 973.974 kb on + strand, within A4249_RS04685at 973.974 kb on + strand, within A4249_RS04685at 973.975 kb on - strand, within A4249_RS04685at 973.975 kb on - strand, within A4249_RS04685at 973.975 kb on - strand, within A4249_RS04685at 974.090 kb on - strand, within A4249_RS04685at 974.090 kb on - strand, within A4249_RS04685at 974.173 kb on + strand, within A4249_RS04685at 974.174 kb on - strand, within A4249_RS04685at 974.174 kb on - strand, within A4249_RS04685at 974.281 kb on + strandat 974.281 kb on + strandat 974.282 kb on - strandat 974.346 kb on + strandat 974.346 kb on + strandat 974.346 kb on + strandat 974.347 kb on - strandat 974.347 kb on - strandat 974.347 kb on - strandat 974.413 kb on - strand, within A4249_RS04690at 974.466 kb on + strand, within A4249_RS04690at 974.467 kb on - strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.563 kb on + strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.564 kb on - strand, within A4249_RS04690at 974.605 kb on + strand, within A4249_RS04690at 974.606 kb on - strand, within A4249_RS04690at 974.606 kb on - strand, within A4249_RS04690at 974.663 kb on + strand, within A4249_RS04690at 974.663 kb on + strand, within A4249_RS04690at 974.663 kb on + strand, within A4249_RS04690at 974.664 kb on - strand, within A4249_RS04690at 974.664 kb on - strand, within A4249_RS04690at 974.664 kb on - strand, within A4249_RS04690at 974.722 kb on + strand, within A4249_RS04690at 974.809 kb on + strandat 974.809 kb on + strandat 974.809 kb on + strandat 974.810 kb on - strandat 974.810 kb on - strandat 974.810 kb on - strandat 974.832 kb on + strandat 974.832 kb on + strandat 974.832 kb on + strandat 974.833 kb on - strandat 974.833 kb on - strandat 974.991 kb on + strandat 974.991 kb on + strandat 974.991 kb on + strandat 974.991 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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973,475 - -0.3
973,475 - +0.2
973,475 - -0.5
973,515 - -0.1
973,533 + +1.0
973,534 - -0.2
973,534 - -0.3
973,534 - -0.0
973,534 - -0.2
973,534 - -0.2
973,534 - -0.1
973,534 - -0.3
973,534 - -0.2
973,534 - -0.0
973,743 - A4249_RS04685 0.27 -0.0
973,839 + A4249_RS04685 0.41 -0.4
973,840 - A4249_RS04685 0.41 -0.2
973,840 - A4249_RS04685 0.41 +0.1
973,840 - A4249_RS04685 0.41 +0.9
973,840 - A4249_RS04685 0.41 +0.2
973,840 - A4249_RS04685 0.41 -0.0
973,878 + A4249_RS04685 0.46 -0.4
973,878 + A4249_RS04685 0.46 -0.3
973,879 - A4249_RS04685 0.46 -0.4
973,879 - A4249_RS04685 0.46 +0.1
973,879 - A4249_RS04685 0.46 -0.1
973,879 - A4249_RS04685 0.46 -0.5
973,879 - A4249_RS04685 0.46 -1.0
973,879 - A4249_RS04685 0.46 -0.1
973,974 + A4249_RS04685 0.60 -0.1
973,974 + A4249_RS04685 0.60 -0.6
973,974 + A4249_RS04685 0.60 -0.4
973,975 - A4249_RS04685 0.60 -0.1
973,975 - A4249_RS04685 0.60 +0.7
973,975 - A4249_RS04685 0.60 -0.1
974,090 - A4249_RS04685 0.76 +0.3
974,090 - A4249_RS04685 0.76 -0.3
974,173 + A4249_RS04685 0.88 -1.4
974,174 - A4249_RS04685 0.88 -1.0
974,174 - A4249_RS04685 0.88 +0.5
974,281 + -0.6
974,281 + +0.1
974,282 - -1.1
974,346 + +0.3
974,346 + -0.7
974,346 + -0.7
974,347 - +0.4
974,347 - -0.7
974,347 - -0.4
974,413 - A4249_RS04690 0.17 -1.2
974,466 + A4249_RS04690 0.29 +0.3
974,467 - A4249_RS04690 0.29 -0.4
974,563 + A4249_RS04690 0.50 -0.3
974,563 + A4249_RS04690 0.50 +0.9
974,563 + A4249_RS04690 0.50 +0.2
974,563 + A4249_RS04690 0.50 -0.7
974,563 + A4249_RS04690 0.50 -0.2
974,563 + A4249_RS04690 0.50 -0.6
974,563 + A4249_RS04690 0.50 +0.0
974,563 + A4249_RS04690 0.50 -1.7
974,563 + A4249_RS04690 0.50 +0.6
974,563 + A4249_RS04690 0.50 -1.0
974,563 + A4249_RS04690 0.50 +0.4
974,563 + A4249_RS04690 0.50 +0.4
974,563 + A4249_RS04690 0.50 +0.1
974,563 + A4249_RS04690 0.50 +0.0
974,564 - A4249_RS04690 0.50 -0.2
974,564 - A4249_RS04690 0.50 -1.2
974,564 - A4249_RS04690 0.50 +0.1
974,564 - A4249_RS04690 0.50 +0.2
974,564 - A4249_RS04690 0.50 -0.1
974,564 - A4249_RS04690 0.50 -0.1
974,564 - A4249_RS04690 0.50 +0.3
974,564 - A4249_RS04690 0.50 -0.1
974,564 - A4249_RS04690 0.50 +0.1
974,564 - A4249_RS04690 0.50 -0.0
974,564 - A4249_RS04690 0.50 +0.2
974,564 - A4249_RS04690 0.50 -0.6
974,564 - A4249_RS04690 0.50 -0.1
974,564 - A4249_RS04690 0.50 -1.9
974,564 - A4249_RS04690 0.50 -0.3
974,564 - A4249_RS04690 0.50 -0.3
974,564 - A4249_RS04690 0.50 +0.2
974,605 + A4249_RS04690 0.59 +0.1
974,606 - A4249_RS04690 0.59 +0.4
974,606 - A4249_RS04690 0.59 +0.0
974,663 + A4249_RS04690 0.72 +0.0
974,663 + A4249_RS04690 0.72 +0.4
974,663 + A4249_RS04690 0.72 +0.3
974,664 - A4249_RS04690 0.72 -1.2
974,664 - A4249_RS04690 0.72 -1.4
974,664 - A4249_RS04690 0.72 -0.8
974,722 + A4249_RS04690 0.85 +0.1
974,809 + -0.7
974,809 + -0.2
974,809 + +0.3
974,810 - -0.7
974,810 - -0.8
974,810 - -1.4
974,832 + +0.8
974,832 + +0.4
974,832 + -0.5
974,833 - +0.3
974,833 - +0.3
974,991 + +0.1
974,991 + +0.0
974,991 + -0.2
974,991 + +1.1

Or see this region's nucleotide sequence