Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04435

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS04430 and A4249_RS04435 are separated by 15 nucleotidesA4249_RS04435 and A4249_RS04440 are separated by 92 nucleotides A4249_RS04430: A4249_RS04430 - TonB-dependent receptor, at 918,289 to 921,360 _RS04430 A4249_RS04435: A4249_RS04435 - hypothetical protein, at 921,376 to 922,728 _RS04435 A4249_RS04440: A4249_RS04440 - MFS transporter, at 922,821 to 924,173 _RS04440 Position (kb) 921 922 923Strain fitness (log2 ratio) -2 -1 0 1 2at 920.381 kb on - strand, within A4249_RS04430at 920.407 kb on + strand, within A4249_RS04430at 920.407 kb on + strand, within A4249_RS04430at 920.407 kb on + strand, within A4249_RS04430at 920.407 kb on + strand, within A4249_RS04430at 920.407 kb on + strand, within A4249_RS04430at 920.407 kb on + strand, within A4249_RS04430at 920.407 kb on + strand, within A4249_RS04430at 920.408 kb on - strand, within A4249_RS04430at 920.408 kb on - strand, within A4249_RS04430at 920.408 kb on - strand, within A4249_RS04430at 920.408 kb on - strand, within A4249_RS04430at 920.408 kb on - strand, within A4249_RS04430at 920.408 kb on - strand, within A4249_RS04430at 920.671 kb on + strand, within A4249_RS04430at 920.671 kb on + strand, within A4249_RS04430at 920.671 kb on + strand, within A4249_RS04430at 920.672 kb on - strand, within A4249_RS04430at 920.672 kb on - strand, within A4249_RS04430at 920.672 kb on - strand, within A4249_RS04430at 920.988 kb on + strand, within A4249_RS04430at 920.988 kb on + strand, within A4249_RS04430at 920.988 kb on + strand, within A4249_RS04430at 920.988 kb on + strand, within A4249_RS04430at 920.988 kb on + strand, within A4249_RS04430at 920.989 kb on - strand, within A4249_RS04430at 920.989 kb on - strand, within A4249_RS04430at 920.989 kb on - strand, within A4249_RS04430at 921.103 kb on + strandat 921.103 kb on + strandat 921.103 kb on + strandat 921.103 kb on + strandat 921.103 kb on + strandat 921.104 kb on - strandat 921.104 kb on - strandat 921.104 kb on - strandat 921.104 kb on - strandat 921.104 kb on - strandat 921.104 kb on - strandat 921.104 kb on - strandat 921.187 kb on + strandat 921.187 kb on + strandat 921.187 kb on + strandat 921.187 kb on + strandat 921.187 kb on + strandat 921.187 kb on + strandat 921.188 kb on - strandat 921.188 kb on - strandat 921.188 kb on - strandat 921.188 kb on - strandat 921.188 kb on - strandat 921.196 kb on + strandat 921.196 kb on + strandat 921.197 kb on - strandat 921.197 kb on - strandat 921.197 kb on - strandat 921.197 kb on - strandat 921.197 kb on - strandat 921.197 kb on - strandat 921.255 kb on + strandat 921.255 kb on + strandat 921.255 kb on + strandat 921.256 kb on - strandat 921.256 kb on - strandat 921.256 kb on - strandat 921.295 kb on + strandat 921.310 kb on + strandat 921.310 kb on + strandat 921.310 kb on + strandat 921.310 kb on + strandat 921.310 kb on + strandat 921.310 kb on + strandat 921.310 kb on + strandat 921.311 kb on - strandat 921.311 kb on - strandat 921.311 kb on - strandat 921.311 kb on - strandat 921.311 kb on - strandat 921.311 kb on - strandat 921.311 kb on - strandat 921.311 kb on - strandat 921.311 kb on - strandat 921.320 kb on - strandat 921.334 kb on + strandat 921.335 kb on - strandat 921.358 kb on + strandat 921.358 kb on + strandat 921.358 kb on + strandat 921.358 kb on + strandat 921.358 kb on + strandat 921.358 kb on + strandat 921.358 kb on + strandat 921.568 kb on + strand, within A4249_RS04435at 921.568 kb on + strand, within A4249_RS04435at 921.569 kb on - strand, within A4249_RS04435at 921.569 kb on - strand, within A4249_RS04435at 921.569 kb on - strand, within A4249_RS04435at 921.571 kb on + strand, within A4249_RS04435at 921.571 kb on + strand, within A4249_RS04435at 921.571 kb on + strand, within A4249_RS04435at 921.572 kb on - strand, within A4249_RS04435at 921.572 kb on - strand, within A4249_RS04435at 921.572 kb on - strand, within A4249_RS04435at 921.572 kb on - strand, within A4249_RS04435at 921.727 kb on + strand, within A4249_RS04435at 921.727 kb on + strand, within A4249_RS04435at 921.727 kb on + strand, within A4249_RS04435at 921.728 kb on - strand, within A4249_RS04435at 921.728 kb on - strand, within A4249_RS04435at 921.749 kb on + strand, within A4249_RS04435at 921.749 kb on + strand, within A4249_RS04435at 921.749 kb on + strand, within A4249_RS04435at 921.750 kb on - strand, within A4249_RS04435at 921.768 kb on + strand, within A4249_RS04435at 921.769 kb on - strand, within A4249_RS04435at 921.769 kb on - strand, within A4249_RS04435at 921.878 kb on - strand, within A4249_RS04435at 921.958 kb on + strand, within A4249_RS04435at 921.958 kb on + strand, within A4249_RS04435at 921.958 kb on + strand, within A4249_RS04435at 921.959 kb on - strand, within A4249_RS04435at 921.959 kb on - strand, within A4249_RS04435at 921.959 kb on - strand, within A4249_RS04435at 921.988 kb on + strand, within A4249_RS04435at 921.988 kb on + strand, within A4249_RS04435at 921.989 kb on - strand, within A4249_RS04435at 921.997 kb on + strand, within A4249_RS04435at 921.997 kb on + strand, within A4249_RS04435at 921.998 kb on - strand, within A4249_RS04435at 921.998 kb on - strand, within A4249_RS04435at 921.998 kb on - strand, within A4249_RS04435at 922.058 kb on + strand, within A4249_RS04435at 922.070 kb on + strand, within A4249_RS04435at 922.167 kb on + strand, within A4249_RS04435at 922.168 kb on - strand, within A4249_RS04435at 922.168 kb on - strand, within A4249_RS04435at 922.214 kb on + strand, within A4249_RS04435at 922.214 kb on + strand, within A4249_RS04435at 922.214 kb on + strand, within A4249_RS04435at 922.214 kb on + strand, within A4249_RS04435at 922.215 kb on - strand, within A4249_RS04435at 922.215 kb on - strand, within A4249_RS04435at 922.290 kb on + strand, within A4249_RS04435at 922.290 kb on + strand, within A4249_RS04435at 922.290 kb on + strand, within A4249_RS04435at 922.291 kb on - strand, within A4249_RS04435at 922.291 kb on - strand, within A4249_RS04435at 922.291 kb on - strand, within A4249_RS04435at 922.291 kb on - strand, within A4249_RS04435at 922.297 kb on + strand, within A4249_RS04435at 922.298 kb on - strand, within A4249_RS04435at 922.298 kb on - strand, within A4249_RS04435at 922.382 kb on - strand, within A4249_RS04435at 922.382 kb on - strand, within A4249_RS04435at 922.475 kb on - strand, within A4249_RS04435at 922.475 kb on - strand, within A4249_RS04435at 922.475 kb on - strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.512 kb on - strand, within A4249_RS04435at 922.512 kb on - strand, within A4249_RS04435at 922.512 kb on - strand, within A4249_RS04435at 922.512 kb on - strand, within A4249_RS04435at 922.512 kb on - strand, within A4249_RS04435at 922.545 kb on + strand, within A4249_RS04435at 922.545 kb on + strand, within A4249_RS04435at 922.545 kb on + strand, within A4249_RS04435at 922.545 kb on + strand, within A4249_RS04435at 922.546 kb on - strand, within A4249_RS04435at 922.546 kb on - strand, within A4249_RS04435at 922.567 kb on + strand, within A4249_RS04435at 922.567 kb on + strand, within A4249_RS04435at 922.567 kb on + strand, within A4249_RS04435at 922.567 kb on + strand, within A4249_RS04435at 922.568 kb on - strand, within A4249_RS04435at 922.568 kb on - strand, within A4249_RS04435at 922.667 kb on - strandat 922.667 kb on - strandat 922.667 kb on - strandat 922.815 kb on - strandat 922.844 kb on + strandat 922.844 kb on + strandat 922.845 kb on - strandat 922.845 kb on - strandat 922.845 kb on - strandat 922.875 kb on + strandat 922.875 kb on + strandat 922.876 kb on - strandat 922.918 kb on + strandat 922.918 kb on + strandat 922.918 kb on + strandat 922.919 kb on - strandat 922.919 kb on - strandat 922.919 kb on - strandat 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.028 kb on - strand, within A4249_RS04440at 923.028 kb on - strand, within A4249_RS04440at 923.028 kb on - strand, within A4249_RS04440at 923.028 kb on - strand, within A4249_RS04440at 923.028 kb on - strand, within A4249_RS04440at 923.029 kb on + strand, within A4249_RS04440at 923.551 kb on + strand, within A4249_RS04440at 923.665 kb on + strand, within A4249_RS04440at 923.665 kb on + strand, within A4249_RS04440at 923.665 kb on + strand, within A4249_RS04440at 923.666 kb on - strand, within A4249_RS04440

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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920,381 - A4249_RS04430 0.68 -0.4
920,407 + A4249_RS04430 0.69 +0.4
920,407 + A4249_RS04430 0.69 +1.2
920,407 + A4249_RS04430 0.69 +0.1
920,407 + A4249_RS04430 0.69 -1.1
920,407 + A4249_RS04430 0.69 +0.5
920,407 + A4249_RS04430 0.69 +0.9
920,407 + A4249_RS04430 0.69 +0.5
920,408 - A4249_RS04430 0.69 -1.0
920,408 - A4249_RS04430 0.69 +0.4
920,408 - A4249_RS04430 0.69 -1.2
920,408 - A4249_RS04430 0.69 +0.1
920,408 - A4249_RS04430 0.69 -0.1
920,408 - A4249_RS04430 0.69 -0.6
920,671 + A4249_RS04430 0.78 +0.1
920,671 + A4249_RS04430 0.78 +0.0
920,671 + A4249_RS04430 0.78 +0.2
920,672 - A4249_RS04430 0.78 +0.1
920,672 - A4249_RS04430 0.78 +1.2
920,672 - A4249_RS04430 0.78 -0.2
920,988 + A4249_RS04430 0.88 +0.6
920,988 + A4249_RS04430 0.88 -0.3
920,988 + A4249_RS04430 0.88 -0.2
920,988 + A4249_RS04430 0.88 +0.1
920,988 + A4249_RS04430 0.88 -0.5
920,989 - A4249_RS04430 0.88 -0.2
920,989 - A4249_RS04430 0.88 -0.3
920,989 - A4249_RS04430 0.88 -0.1
921,103 + -0.1
921,103 + -0.7
921,103 + +1.4
921,103 + +0.4
921,103 + +0.8
921,104 - +0.0
921,104 - -0.6
921,104 - -0.4
921,104 - -0.4
921,104 - +0.9
921,104 - -0.1
921,104 - +0.1
921,187 + -1.0
921,187 + +0.6
921,187 + -0.3
921,187 + +0.1
921,187 + +0.9
921,187 + +0.2
921,188 - -0.5
921,188 - +0.2
921,188 - -0.3
921,188 - +0.1
921,188 - -0.4
921,196 + +1.8
921,196 + +0.0
921,197 - +0.7
921,197 - +0.6
921,197 - +0.5
921,197 - +0.3
921,197 - -0.3
921,197 - -0.5
921,255 + +1.1
921,255 + -0.3
921,255 + +0.0
921,256 - -0.1
921,256 - +0.3
921,256 - +0.3
921,295 + +1.0
921,310 + -0.2
921,310 + +0.2
921,310 + -0.4
921,310 + +0.6
921,310 + -1.2
921,310 + +0.1
921,310 + +0.7
921,311 - -1.3
921,311 - -0.5
921,311 - -0.9
921,311 - -0.3
921,311 - -0.2
921,311 - +0.2
921,311 - -0.8
921,311 - +0.4
921,311 - +0.1
921,320 - +0.7
921,334 + -0.5
921,335 - -0.8
921,358 + +0.8
921,358 + +0.6
921,358 + -0.2
921,358 + -0.4
921,358 + -0.8
921,358 + -0.3
921,358 + -0.2
921,568 + A4249_RS04435 0.14 +0.1
921,568 + A4249_RS04435 0.14 +0.0
921,569 - A4249_RS04435 0.14 +0.3
921,569 - A4249_RS04435 0.14 +0.1
921,569 - A4249_RS04435 0.14 -1.4
921,571 + A4249_RS04435 0.14 -0.6
921,571 + A4249_RS04435 0.14 -0.0
921,571 + A4249_RS04435 0.14 -0.2
921,572 - A4249_RS04435 0.14 -1.2
921,572 - A4249_RS04435 0.14 -0.1
921,572 - A4249_RS04435 0.14 -0.1
921,572 - A4249_RS04435 0.14 -1.7
921,727 + A4249_RS04435 0.26 -0.3
921,727 + A4249_RS04435 0.26 -0.0
921,727 + A4249_RS04435 0.26 -0.1
921,728 - A4249_RS04435 0.26 -0.6
921,728 - A4249_RS04435 0.26 -0.1
921,749 + A4249_RS04435 0.28 +0.5
921,749 + A4249_RS04435 0.28 -0.4
921,749 + A4249_RS04435 0.28 +0.4
921,750 - A4249_RS04435 0.28 +0.1
921,768 + A4249_RS04435 0.29 -0.4
921,769 - A4249_RS04435 0.29 +0.6
921,769 - A4249_RS04435 0.29 +0.4
921,878 - A4249_RS04435 0.37 +0.0
921,958 + A4249_RS04435 0.43 +0.6
921,958 + A4249_RS04435 0.43 +0.1
921,958 + A4249_RS04435 0.43 -0.3
921,959 - A4249_RS04435 0.43 +0.0
921,959 - A4249_RS04435 0.43 -0.1
921,959 - A4249_RS04435 0.43 -0.5
921,988 + A4249_RS04435 0.45 -0.1
921,988 + A4249_RS04435 0.45 -0.7
921,989 - A4249_RS04435 0.45 +0.0
921,997 + A4249_RS04435 0.46 +0.6
921,997 + A4249_RS04435 0.46 +0.4
921,998 - A4249_RS04435 0.46 +0.6
921,998 - A4249_RS04435 0.46 -0.1
921,998 - A4249_RS04435 0.46 -0.2
922,058 + A4249_RS04435 0.50 +0.0
922,070 + A4249_RS04435 0.51 +0.1
922,167 + A4249_RS04435 0.58 -0.1
922,168 - A4249_RS04435 0.59 +0.0
922,168 - A4249_RS04435 0.59 -1.7
922,214 + A4249_RS04435 0.62 +0.1
922,214 + A4249_RS04435 0.62 +0.1
922,214 + A4249_RS04435 0.62 -0.3
922,214 + A4249_RS04435 0.62 +0.6
922,215 - A4249_RS04435 0.62 -0.2
922,215 - A4249_RS04435 0.62 +0.5
922,290 + A4249_RS04435 0.68 -0.2
922,290 + A4249_RS04435 0.68 -0.5
922,290 + A4249_RS04435 0.68 +0.3
922,291 - A4249_RS04435 0.68 +0.2
922,291 - A4249_RS04435 0.68 +0.1
922,291 - A4249_RS04435 0.68 -1.0
922,291 - A4249_RS04435 0.68 -0.3
922,297 + A4249_RS04435 0.68 -0.2
922,298 - A4249_RS04435 0.68 +0.3
922,298 - A4249_RS04435 0.68 +0.4
922,382 - A4249_RS04435 0.74 -1.3
922,382 - A4249_RS04435 0.74 -0.1
922,475 - A4249_RS04435 0.81 +0.3
922,475 - A4249_RS04435 0.81 -0.0
922,475 - A4249_RS04435 0.81 +0.1
922,511 + A4249_RS04435 0.84 -0.7
922,511 + A4249_RS04435 0.84 +0.1
922,511 + A4249_RS04435 0.84 -0.1
922,511 + A4249_RS04435 0.84 -0.3
922,511 + A4249_RS04435 0.84 +0.1
922,511 + A4249_RS04435 0.84 +0.1
922,512 - A4249_RS04435 0.84 -0.4
922,512 - A4249_RS04435 0.84 +0.6
922,512 - A4249_RS04435 0.84 +1.6
922,512 - A4249_RS04435 0.84 -0.5
922,512 - A4249_RS04435 0.84 +0.3
922,545 + A4249_RS04435 0.86 -0.2
922,545 + A4249_RS04435 0.86 -0.1
922,545 + A4249_RS04435 0.86 +0.1
922,545 + A4249_RS04435 0.86 +0.1
922,546 - A4249_RS04435 0.86 -0.5
922,546 - A4249_RS04435 0.86 +0.3
922,567 + A4249_RS04435 0.88 -0.1
922,567 + A4249_RS04435 0.88 +0.7
922,567 + A4249_RS04435 0.88 -0.4
922,567 + A4249_RS04435 0.88 -0.1
922,568 - A4249_RS04435 0.88 -1.5
922,568 - A4249_RS04435 0.88 -0.9
922,667 - -0.6
922,667 - -0.3
922,667 - +0.2
922,815 - -0.4
922,844 + -0.3
922,844 + +0.0
922,845 - -0.1
922,845 - -1.7
922,845 - +0.6
922,875 + -0.1
922,875 + -0.4
922,876 - +0.5
922,918 + -2.4
922,918 + +0.7
922,918 + -0.7
922,919 - +0.1
922,919 - +0.0
922,919 - +0.5
923,027 + A4249_RS04440 0.15 +0.1
923,027 + A4249_RS04440 0.15 +0.4
923,027 + A4249_RS04440 0.15 +0.3
923,027 + A4249_RS04440 0.15 -0.1
923,027 + A4249_RS04440 0.15 +0.2
923,027 + A4249_RS04440 0.15 -0.0
923,027 + A4249_RS04440 0.15 -0.4
923,027 + A4249_RS04440 0.15 +0.0
923,027 + A4249_RS04440 0.15 +0.2
923,028 - A4249_RS04440 0.15 -0.9
923,028 - A4249_RS04440 0.15 +0.2
923,028 - A4249_RS04440 0.15 -0.3
923,028 - A4249_RS04440 0.15 +0.4
923,028 - A4249_RS04440 0.15 +0.0
923,029 + A4249_RS04440 0.15 +0.2
923,551 + A4249_RS04440 0.54 +0.0
923,665 + A4249_RS04440 0.62 -0.1
923,665 + A4249_RS04440 0.62 +0.2
923,665 + A4249_RS04440 0.62 -0.0
923,666 - A4249_RS04440 0.62 +0.6

Or see this region's nucleotide sequence