Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS03215

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS03200 and A4249_RS03205 are separated by 10 nucleotidesA4249_RS03205 and A4249_RS03210 are separated by 16 nucleotidesA4249_RS03210 and A4249_RS03215 are separated by 87 nucleotidesA4249_RS03215 and A4249_RS03220 are separated by 55 nucleotides A4249_RS03200: A4249_RS03200 - ammonium transporter family protein, at 672,905 to 673,132 _RS03200 A4249_RS03205: A4249_RS03205 - copper resistance protein CopC, at 673,143 to 673,526 _RS03205 A4249_RS03210: A4249_RS03210 - copper resistance protein B, at 673,543 to 673,956 _RS03210 A4249_RS03215: A4249_RS03215 - DUF4198 domain-containing protein, at 674,044 to 674,829 _RS03215 A4249_RS03220: A4249_RS03220 - TonB-dependent receptor, at 674,885 to 677,869 _RS03220 Position (kb) 674 675Strain fitness (log2 ratio) -2 -1 0 1at 673.216 kb on + strand, within A4249_RS03205at 673.216 kb on + strand, within A4249_RS03205at 673.216 kb on + strand, within A4249_RS03205at 673.216 kb on + strand, within A4249_RS03205at 673.216 kb on + strand, within A4249_RS03205at 673.216 kb on + strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.217 kb on - strand, within A4249_RS03205at 673.544 kb on + strandat 673.585 kb on + strand, within A4249_RS03210at 673.585 kb on + strand, within A4249_RS03210at 673.586 kb on - strand, within A4249_RS03210at 673.610 kb on + strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.611 kb on - strand, within A4249_RS03210at 673.655 kb on + strand, within A4249_RS03210at 673.683 kb on - strand, within A4249_RS03210at 673.683 kb on - strand, within A4249_RS03210at 673.683 kb on - strand, within A4249_RS03210at 673.812 kb on - strand, within A4249_RS03210at 673.812 kb on - strand, within A4249_RS03210at 673.883 kb on + strand, within A4249_RS03210at 673.883 kb on + strand, within A4249_RS03210at 673.884 kb on - strand, within A4249_RS03210at 673.923 kb on + strandat 673.923 kb on + strandat 673.923 kb on + strandat 673.923 kb on + strandat 673.924 kb on - strandat 673.996 kb on + strandat 673.996 kb on + strandat 673.997 kb on - strandat 673.997 kb on - strandat 674.045 kb on + strandat 674.045 kb on + strandat 674.046 kb on - strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.118 kb on + strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.119 kb on - strandat 674.123 kb on - strand, within A4249_RS03215at 674.123 kb on - strand, within A4249_RS03215at 674.123 kb on - strand, within A4249_RS03215at 674.477 kb on + strand, within A4249_RS03215at 674.477 kb on + strand, within A4249_RS03215at 674.477 kb on + strand, within A4249_RS03215at 674.477 kb on + strand, within A4249_RS03215at 674.478 kb on - strand, within A4249_RS03215at 674.478 kb on - strand, within A4249_RS03215at 674.478 kb on - strand, within A4249_RS03215at 674.478 kb on - strand, within A4249_RS03215at 674.709 kb on + strand, within A4249_RS03215at 674.709 kb on + strand, within A4249_RS03215at 674.710 kb on - strand, within A4249_RS03215at 674.710 kb on - strand, within A4249_RS03215at 674.710 kb on - strand, within A4249_RS03215at 674.910 kb on + strandat 674.910 kb on + strandat 674.910 kb on + strandat 674.911 kb on - strandat 674.911 kb on - strandat 674.911 kb on - strandat 674.911 kb on - strandat 674.911 kb on - strandat 674.934 kb on + strandat 674.934 kb on + strandat 674.934 kb on + strandat 674.934 kb on + strandat 674.934 kb on + strandat 674.935 kb on - strandat 674.935 kb on - strandat 674.935 kb on - strandat 674.935 kb on - strandat 674.935 kb on - strandat 674.951 kb on - strandat 674.973 kb on + strandat 674.974 kb on - strandat 674.974 kb on - strandat 674.974 kb on - strandat 674.974 kb on - strandat 675.063 kb on + strandat 675.063 kb on + strandat 675.063 kb on + strandat 675.064 kb on - strandat 675.197 kb on + strand, within A4249_RS03220at 675.197 kb on + strand, within A4249_RS03220at 675.198 kb on - strand, within A4249_RS03220at 675.237 kb on + strand, within A4249_RS03220at 675.238 kb on - strand, within A4249_RS03220at 675.238 kb on - strand, within A4249_RS03220at 675.238 kb on - strand, within A4249_RS03220at 675.238 kb on - strand, within A4249_RS03220at 675.238 kb on - strand, within A4249_RS03220at 675.326 kb on + strand, within A4249_RS03220at 675.326 kb on + strand, within A4249_RS03220at 675.326 kb on + strand, within A4249_RS03220at 675.326 kb on + strand, within A4249_RS03220at 675.326 kb on + strand, within A4249_RS03220at 675.326 kb on + strand, within A4249_RS03220at 675.326 kb on + strand, within A4249_RS03220at 675.326 kb on + strand, within A4249_RS03220at 675.326 kb on + strand, within A4249_RS03220at 675.326 kb on + strand, within A4249_RS03220at 675.327 kb on - strand, within A4249_RS03220at 675.327 kb on - strand, within A4249_RS03220at 675.327 kb on - strand, within A4249_RS03220at 675.327 kb on - strand, within A4249_RS03220at 675.327 kb on - strand, within A4249_RS03220at 675.327 kb on - strand, within A4249_RS03220at 675.327 kb on - strand, within A4249_RS03220at 675.327 kb on - strand, within A4249_RS03220at 675.327 kb on - strand, within A4249_RS03220at 675.327 kb on - strand, within A4249_RS03220at 675.477 kb on + strand, within A4249_RS03220at 675.477 kb on + strand, within A4249_RS03220at 675.478 kb on - strand, within A4249_RS03220at 675.507 kb on + strand, within A4249_RS03220at 675.508 kb on - strand, within A4249_RS03220at 675.508 kb on - strand, within A4249_RS03220at 675.508 kb on - strand, within A4249_RS03220at 675.570 kb on + strand, within A4249_RS03220at 675.570 kb on + strand, within A4249_RS03220at 675.570 kb on + strand, within A4249_RS03220at 675.570 kb on + strand, within A4249_RS03220at 675.570 kb on + strand, within A4249_RS03220at 675.570 kb on + strand, within A4249_RS03220at 675.570 kb on + strand, within A4249_RS03220at 675.570 kb on + strand, within A4249_RS03220at 675.570 kb on + strand, within A4249_RS03220at 675.571 kb on - strand, within A4249_RS03220at 675.571 kb on - strand, within A4249_RS03220at 675.571 kb on - strand, within A4249_RS03220at 675.571 kb on - strand, within A4249_RS03220at 675.571 kb on - strand, within A4249_RS03220at 675.571 kb on - strand, within A4249_RS03220at 675.571 kb on - strand, within A4249_RS03220at 675.573 kb on + strand, within A4249_RS03220at 675.574 kb on - strand, within A4249_RS03220at 675.574 kb on - strand, within A4249_RS03220at 675.598 kb on + strand, within A4249_RS03220at 675.611 kb on - strand, within A4249_RS03220at 675.611 kb on - strand, within A4249_RS03220at 675.611 kb on - strand, within A4249_RS03220at 675.626 kb on + strand, within A4249_RS03220at 675.626 kb on + strand, within A4249_RS03220at 675.626 kb on + strand, within A4249_RS03220at 675.720 kb on + strand, within A4249_RS03220at 675.720 kb on + strand, within A4249_RS03220at 675.720 kb on + strand, within A4249_RS03220at 675.721 kb on - strand, within A4249_RS03220at 675.721 kb on - strand, within A4249_RS03220at 675.721 kb on - strand, within A4249_RS03220at 675.721 kb on - strand, within A4249_RS03220at 675.721 kb on - strand, within A4249_RS03220

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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673,216 + A4249_RS03205 0.19 -1.1
673,216 + A4249_RS03205 0.19 +0.6
673,216 + A4249_RS03205 0.19 -0.0
673,216 + A4249_RS03205 0.19 +0.2
673,216 + A4249_RS03205 0.19 -0.3
673,216 + A4249_RS03205 0.19 +0.3
673,217 - A4249_RS03205 0.19 +0.6
673,217 - A4249_RS03205 0.19 +0.9
673,217 - A4249_RS03205 0.19 -0.0
673,217 - A4249_RS03205 0.19 +0.2
673,217 - A4249_RS03205 0.19 +0.4
673,217 - A4249_RS03205 0.19 +0.0
673,217 - A4249_RS03205 0.19 +0.0
673,217 - A4249_RS03205 0.19 +0.2
673,217 - A4249_RS03205 0.19 -2.0
673,217 - A4249_RS03205 0.19 -2.0
673,544 + +0.4
673,585 + A4249_RS03210 0.10 -0.3
673,585 + A4249_RS03210 0.10 -0.1
673,586 - A4249_RS03210 0.10 +0.1
673,610 + A4249_RS03210 0.16 +0.1
673,611 - A4249_RS03210 0.16 -0.4
673,611 - A4249_RS03210 0.16 +0.2
673,611 - A4249_RS03210 0.16 +0.3
673,611 - A4249_RS03210 0.16 -1.6
673,611 - A4249_RS03210 0.16 +0.2
673,611 - A4249_RS03210 0.16 +0.5
673,611 - A4249_RS03210 0.16 +0.3
673,655 + A4249_RS03210 0.27 +0.4
673,683 - A4249_RS03210 0.34 -0.5
673,683 - A4249_RS03210 0.34 +0.4
673,683 - A4249_RS03210 0.34 -0.8
673,812 - A4249_RS03210 0.65 +0.1
673,812 - A4249_RS03210 0.65 -0.1
673,883 + A4249_RS03210 0.82 -1.3
673,883 + A4249_RS03210 0.82 -0.1
673,884 - A4249_RS03210 0.82 -0.0
673,923 + +0.5
673,923 + +0.4
673,923 + -1.8
673,923 + +1.3
673,924 - +0.2
673,996 + -0.5
673,996 + -1.3
673,997 - -0.1
673,997 - +0.3
674,045 + +0.1
674,045 + -0.1
674,046 - +1.1
674,118 + +0.1
674,118 + +0.2
674,118 + -2.0
674,118 + +0.6
674,118 + -0.9
674,118 + -0.6
674,118 + +0.5
674,119 - -0.3
674,119 - +0.3
674,119 - +0.2
674,119 - -0.3
674,119 - -0.8
674,119 - +0.2
674,119 - -0.3
674,119 - +0.3
674,119 - -0.6
674,123 - A4249_RS03215 0.10 -0.2
674,123 - A4249_RS03215 0.10 -0.2
674,123 - A4249_RS03215 0.10 -1.0
674,477 + A4249_RS03215 0.55 -0.2
674,477 + A4249_RS03215 0.55 -0.7
674,477 + A4249_RS03215 0.55 -0.6
674,477 + A4249_RS03215 0.55 -0.3
674,478 - A4249_RS03215 0.55 +0.5
674,478 - A4249_RS03215 0.55 +0.3
674,478 - A4249_RS03215 0.55 +0.3
674,478 - A4249_RS03215 0.55 +0.0
674,709 + A4249_RS03215 0.85 -0.2
674,709 + A4249_RS03215 0.85 -0.1
674,710 - A4249_RS03215 0.85 +0.7
674,710 - A4249_RS03215 0.85 +0.7
674,710 - A4249_RS03215 0.85 -1.3
674,910 + +0.0
674,910 + +0.2
674,910 + +0.7
674,911 - -0.1
674,911 - +0.1
674,911 - -0.1
674,911 - +0.6
674,911 - -0.5
674,934 + -0.2
674,934 + -0.3
674,934 + -0.3
674,934 + -0.1
674,934 + -0.9
674,935 - +0.3
674,935 - -0.8
674,935 - +0.8
674,935 - -0.3
674,935 - +0.3
674,951 - +0.2
674,973 + +0.3
674,974 - +0.4
674,974 - -0.5
674,974 - -0.6
674,974 - -0.0
675,063 + +0.5
675,063 + -1.1
675,063 + -0.2
675,064 - +0.0
675,197 + A4249_RS03220 0.10 +0.6
675,197 + A4249_RS03220 0.10 -1.9
675,198 - A4249_RS03220 0.10 -0.7
675,237 + A4249_RS03220 0.12 -0.6
675,238 - A4249_RS03220 0.12 +0.5
675,238 - A4249_RS03220 0.12 -1.0
675,238 - A4249_RS03220 0.12 +0.9
675,238 - A4249_RS03220 0.12 +0.4
675,238 - A4249_RS03220 0.12 +0.9
675,326 + A4249_RS03220 0.15 -0.2
675,326 + A4249_RS03220 0.15 -0.1
675,326 + A4249_RS03220 0.15 -0.3
675,326 + A4249_RS03220 0.15 +0.1
675,326 + A4249_RS03220 0.15 +0.4
675,326 + A4249_RS03220 0.15 +0.4
675,326 + A4249_RS03220 0.15 -0.3
675,326 + A4249_RS03220 0.15 -1.0
675,326 + A4249_RS03220 0.15 -0.5
675,326 + A4249_RS03220 0.15 -0.3
675,327 - A4249_RS03220 0.15 -0.2
675,327 - A4249_RS03220 0.15 -0.6
675,327 - A4249_RS03220 0.15 -0.0
675,327 - A4249_RS03220 0.15 +0.2
675,327 - A4249_RS03220 0.15 +0.3
675,327 - A4249_RS03220 0.15 -0.1
675,327 - A4249_RS03220 0.15 -0.6
675,327 - A4249_RS03220 0.15 +1.6
675,327 - A4249_RS03220 0.15 +1.4
675,327 - A4249_RS03220 0.15 +1.1
675,477 + A4249_RS03220 0.20 +0.4
675,477 + A4249_RS03220 0.20 -1.2
675,478 - A4249_RS03220 0.20 +0.4
675,507 + A4249_RS03220 0.21 +0.1
675,508 - A4249_RS03220 0.21 +0.1
675,508 - A4249_RS03220 0.21 -0.5
675,508 - A4249_RS03220 0.21 +0.1
675,570 + A4249_RS03220 0.23 -0.2
675,570 + A4249_RS03220 0.23 +0.4
675,570 + A4249_RS03220 0.23 -0.7
675,570 + A4249_RS03220 0.23 -0.2
675,570 + A4249_RS03220 0.23 -0.5
675,570 + A4249_RS03220 0.23 -0.6
675,570 + A4249_RS03220 0.23 -0.3
675,570 + A4249_RS03220 0.23 +0.3
675,570 + A4249_RS03220 0.23 +0.6
675,571 - A4249_RS03220 0.23 -0.1
675,571 - A4249_RS03220 0.23 -1.3
675,571 - A4249_RS03220 0.23 +0.1
675,571 - A4249_RS03220 0.23 +0.3
675,571 - A4249_RS03220 0.23 +0.1
675,571 - A4249_RS03220 0.23 +0.2
675,571 - A4249_RS03220 0.23 -0.2
675,573 + A4249_RS03220 0.23 -0.3
675,574 - A4249_RS03220 0.23 +0.1
675,574 - A4249_RS03220 0.23 +0.6
675,598 + A4249_RS03220 0.24 +0.3
675,611 - A4249_RS03220 0.24 +0.4
675,611 - A4249_RS03220 0.24 -0.3
675,611 - A4249_RS03220 0.24 +0.1
675,626 + A4249_RS03220 0.25 +0.2
675,626 + A4249_RS03220 0.25 -0.4
675,626 + A4249_RS03220 0.25 +0.3
675,720 + A4249_RS03220 0.28 +0.7
675,720 + A4249_RS03220 0.28 -0.6
675,720 + A4249_RS03220 0.28 +1.2
675,721 - A4249_RS03220 0.28 -1.2
675,721 - A4249_RS03220 0.28 +0.1
675,721 - A4249_RS03220 0.28 +0.2
675,721 - A4249_RS03220 0.28 -0.4
675,721 - A4249_RS03220 0.28 +0.9

Or see this region's nucleotide sequence