Experiment: Adenine 0.74 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS03195 and A4249_RS03200 are separated by 65 nucleotides A4249_RS03200 and A4249_RS03205 are separated by 10 nucleotides A4249_RS03205 and A4249_RS03210 are separated by 16 nucleotides A4249_RS03210 and A4249_RS03215 are separated by 87 nucleotides A4249_RS03215 and A4249_RS03220 are separated by 55 nucleotides
A4249_RS03195: A4249_RS03195 - toxin-antitoxin system, antitoxin component, at 672,540 to 672,839
_RS03195
A4249_RS03200: A4249_RS03200 - ammonium transporter family protein, at 672,905 to 673,132
_RS03200
A4249_RS03205: A4249_RS03205 - copper resistance protein CopC, at 673,143 to 673,526
_RS03205
A4249_RS03210: A4249_RS03210 - copper resistance protein B, at 673,543 to 673,956
_RS03210
A4249_RS03215: A4249_RS03215 - DUF4198 domain-containing protein, at 674,044 to 674,829
_RS03215
A4249_RS03220: A4249_RS03220 - TonB-dependent receptor, at 674,885 to 677,869
_RS03220
Position (kb) 673
674 Strain fitness (log2 ratio) -2
-1
0
1 at 672.549 kb on + strand at 672.549 kb on + strand at 672.549 kb on + strand at 672.550 kb on - strand at 672.550 kb on - strand at 672.550 kb on - strand at 673.216 kb on + strand, within A4249_RS03205 at 673.216 kb on + strand, within A4249_RS03205 at 673.216 kb on + strand, within A4249_RS03205 at 673.216 kb on + strand, within A4249_RS03205 at 673.216 kb on + strand, within A4249_RS03205 at 673.216 kb on + strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.217 kb on - strand, within A4249_RS03205 at 673.544 kb on + strand at 673.585 kb on + strand, within A4249_RS03210 at 673.585 kb on + strand, within A4249_RS03210 at 673.586 kb on - strand, within A4249_RS03210 at 673.610 kb on + strand, within A4249_RS03210 at 673.611 kb on - strand, within A4249_RS03210 at 673.611 kb on - strand, within A4249_RS03210 at 673.611 kb on - strand, within A4249_RS03210 at 673.611 kb on - strand, within A4249_RS03210 at 673.611 kb on - strand, within A4249_RS03210 at 673.611 kb on - strand, within A4249_RS03210 at 673.611 kb on - strand, within A4249_RS03210 at 673.655 kb on + strand, within A4249_RS03210 at 673.683 kb on - strand, within A4249_RS03210 at 673.683 kb on - strand, within A4249_RS03210 at 673.683 kb on - strand, within A4249_RS03210 at 673.812 kb on - strand, within A4249_RS03210 at 673.812 kb on - strand, within A4249_RS03210 at 673.883 kb on + strand, within A4249_RS03210 at 673.883 kb on + strand, within A4249_RS03210 at 673.884 kb on - strand, within A4249_RS03210 at 673.923 kb on + strand at 673.923 kb on + strand at 673.923 kb on + strand at 673.923 kb on + strand at 673.924 kb on - strand at 673.996 kb on + strand at 673.996 kb on + strand at 673.997 kb on - strand at 673.997 kb on - strand at 674.045 kb on + strand at 674.045 kb on + strand at 674.046 kb on - strand at 674.118 kb on + strand at 674.118 kb on + strand at 674.118 kb on + strand at 674.118 kb on + strand at 674.118 kb on + strand at 674.118 kb on + strand at 674.118 kb on + strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.119 kb on - strand at 674.123 kb on - strand, within A4249_RS03215 at 674.123 kb on - strand, within A4249_RS03215 at 674.123 kb on - strand, within A4249_RS03215 at 674.477 kb on + strand, within A4249_RS03215 at 674.477 kb on + strand, within A4249_RS03215 at 674.477 kb on + strand, within A4249_RS03215 at 674.477 kb on + strand, within A4249_RS03215 at 674.478 kb on - strand, within A4249_RS03215 at 674.478 kb on - strand, within A4249_RS03215 at 674.478 kb on - strand, within A4249_RS03215 at 674.478 kb on - strand, within A4249_RS03215 at 674.709 kb on + strand, within A4249_RS03215 at 674.709 kb on + strand, within A4249_RS03215 at 674.710 kb on - strand, within A4249_RS03215 at 674.710 kb on - strand, within A4249_RS03215 at 674.710 kb on - strand, within A4249_RS03215 at 674.910 kb on + strand at 674.910 kb on + strand at 674.910 kb on + strand at 674.911 kb on - strand at 674.911 kb on - strand at 674.911 kb on - strand at 674.911 kb on - strand at 674.911 kb on - strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.934 kb on + strand at 674.935 kb on - strand at 674.935 kb on - strand at 674.935 kb on - strand at 674.935 kb on - strand at 674.935 kb on - strand at 674.951 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C) remove 672,549 + -0.0 672,549 + -0.3 672,549 + -0.2 672,550 - -0.1 672,550 - -0.1 672,550 - +0.2 673,216 + A4249_RS03205 0.19 -1.1 673,216 + A4249_RS03205 0.19 +0.6 673,216 + A4249_RS03205 0.19 -0.0 673,216 + A4249_RS03205 0.19 +0.2 673,216 + A4249_RS03205 0.19 -0.3 673,216 + A4249_RS03205 0.19 +0.3 673,217 - A4249_RS03205 0.19 +0.6 673,217 - A4249_RS03205 0.19 +0.9 673,217 - A4249_RS03205 0.19 -0.0 673,217 - A4249_RS03205 0.19 +0.2 673,217 - A4249_RS03205 0.19 +0.4 673,217 - A4249_RS03205 0.19 +0.0 673,217 - A4249_RS03205 0.19 +0.0 673,217 - A4249_RS03205 0.19 +0.2 673,217 - A4249_RS03205 0.19 -2.0 673,217 - A4249_RS03205 0.19 -2.0 673,544 + +0.4 673,585 + A4249_RS03210 0.10 -0.3 673,585 + A4249_RS03210 0.10 -0.1 673,586 - A4249_RS03210 0.10 +0.1 673,610 + A4249_RS03210 0.16 +0.1 673,611 - A4249_RS03210 0.16 -0.4 673,611 - A4249_RS03210 0.16 +0.2 673,611 - A4249_RS03210 0.16 +0.3 673,611 - A4249_RS03210 0.16 -1.6 673,611 - A4249_RS03210 0.16 +0.2 673,611 - A4249_RS03210 0.16 +0.5 673,611 - A4249_RS03210 0.16 +0.3 673,655 + A4249_RS03210 0.27 +0.4 673,683 - A4249_RS03210 0.34 -0.5 673,683 - A4249_RS03210 0.34 +0.4 673,683 - A4249_RS03210 0.34 -0.8 673,812 - A4249_RS03210 0.65 +0.1 673,812 - A4249_RS03210 0.65 -0.1 673,883 + A4249_RS03210 0.82 -1.3 673,883 + A4249_RS03210 0.82 -0.1 673,884 - A4249_RS03210 0.82 -0.0 673,923 + +0.5 673,923 + +0.4 673,923 + -1.8 673,923 + +1.3 673,924 - +0.2 673,996 + -0.5 673,996 + -1.3 673,997 - -0.1 673,997 - +0.3 674,045 + +0.1 674,045 + -0.1 674,046 - +1.1 674,118 + +0.1 674,118 + +0.2 674,118 + -2.0 674,118 + +0.6 674,118 + -0.9 674,118 + -0.6 674,118 + +0.5 674,119 - -0.3 674,119 - +0.3 674,119 - +0.2 674,119 - -0.3 674,119 - -0.8 674,119 - +0.2 674,119 - -0.3 674,119 - +0.3 674,119 - -0.6 674,123 - A4249_RS03215 0.10 -0.2 674,123 - A4249_RS03215 0.10 -0.2 674,123 - A4249_RS03215 0.10 -1.0 674,477 + A4249_RS03215 0.55 -0.2 674,477 + A4249_RS03215 0.55 -0.7 674,477 + A4249_RS03215 0.55 -0.6 674,477 + A4249_RS03215 0.55 -0.3 674,478 - A4249_RS03215 0.55 +0.5 674,478 - A4249_RS03215 0.55 +0.3 674,478 - A4249_RS03215 0.55 +0.3 674,478 - A4249_RS03215 0.55 +0.0 674,709 + A4249_RS03215 0.85 -0.2 674,709 + A4249_RS03215 0.85 -0.1 674,710 - A4249_RS03215 0.85 +0.7 674,710 - A4249_RS03215 0.85 +0.7 674,710 - A4249_RS03215 0.85 -1.3 674,910 + +0.0 674,910 + +0.2 674,910 + +0.7 674,911 - -0.1 674,911 - +0.1 674,911 - -0.1 674,911 - +0.6 674,911 - -0.5 674,934 + -0.2 674,934 + -0.3 674,934 + -0.3 674,934 + -0.1 674,934 + -0.9 674,935 - +0.3 674,935 - -0.8 674,935 - +0.8 674,935 - -0.3 674,935 - +0.3 674,951 - +0.2
Or see this region's nucleotide sequence