Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02895

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02885 and A4249_RS02890 are separated by 94 nucleotidesA4249_RS02890 and A4249_RS02895 are separated by 45 nucleotidesA4249_RS02895 and A4249_RS02900 are separated by 112 nucleotidesA4249_RS02900 and A4249_RS02905 are separated by 3 nucleotides A4249_RS02885: A4249_RS02885 - CaiB/BaiF CoA-transferase family protein, at 613,518 to 614,600 _RS02885 A4249_RS02890: A4249_RS02890 - tRNA-Lys, at 614,695 to 614,771 _RS02890 A4249_RS02895: A4249_RS02895 - PAS domain-containing protein, at 614,817 to 617,246 _RS02895 A4249_RS02900: A4249_RS02900 - hypothetical protein, at 617,359 to 617,898 _RS02900 A4249_RS02905: A4249_RS02905 - tRNA guanosine(34) transglycosylase Tgt, at 617,902 to 619,014 _RS02905 Position (kb) 614 615 616 617 618Strain fitness (log2 ratio) -2 -1 0 1 2at 613.855 kb on + strand, within A4249_RS02885at 613.855 kb on + strand, within A4249_RS02885at 613.855 kb on + strand, within A4249_RS02885at 613.856 kb on - strand, within A4249_RS02885at 613.856 kb on - strand, within A4249_RS02885at 613.909 kb on + strand, within A4249_RS02885at 613.910 kb on - strand, within A4249_RS02885at 613.910 kb on - strand, within A4249_RS02885at 613.910 kb on - strand, within A4249_RS02885at 613.910 kb on - strand, within A4249_RS02885at 613.910 kb on - strand, within A4249_RS02885at 613.918 kb on + strand, within A4249_RS02885at 613.918 kb on + strand, within A4249_RS02885at 613.918 kb on + strand, within A4249_RS02885at 613.919 kb on - strand, within A4249_RS02885at 614.130 kb on + strand, within A4249_RS02885at 614.131 kb on - strand, within A4249_RS02885at 614.131 kb on - strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.200 kb on + strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.201 kb on - strand, within A4249_RS02885at 614.308 kb on + strand, within A4249_RS02885at 614.308 kb on + strand, within A4249_RS02885at 614.309 kb on - strand, within A4249_RS02885at 614.589 kb on + strandat 614.589 kb on + strandat 614.589 kb on + strandat 614.589 kb on + strandat 614.589 kb on + strandat 614.590 kb on - strandat 614.590 kb on - strandat 614.590 kb on - strandat 614.590 kb on - strandat 614.590 kb on - strandat 614.611 kb on + strandat 614.774 kb on + strandat 614.774 kb on + strandat 614.774 kb on + strandat 614.774 kb on + strandat 614.775 kb on - strandat 614.775 kb on - strandat 614.775 kb on - strandat 614.884 kb on + strandat 614.884 kb on + strandat 614.884 kb on + strandat 614.884 kb on + strandat 614.885 kb on - strandat 614.885 kb on - strandat 614.885 kb on - strandat 615.086 kb on + strand, within A4249_RS02895at 615.087 kb on - strand, within A4249_RS02895at 615.093 kb on - strand, within A4249_RS02895at 615.106 kb on + strand, within A4249_RS02895at 615.106 kb on + strand, within A4249_RS02895at 615.106 kb on + strand, within A4249_RS02895at 615.107 kb on - strand, within A4249_RS02895at 615.416 kb on - strand, within A4249_RS02895at 615.416 kb on - strand, within A4249_RS02895at 615.416 kb on - strand, within A4249_RS02895at 615.800 kb on - strand, within A4249_RS02895at 615.862 kb on + strand, within A4249_RS02895at 615.862 kb on + strand, within A4249_RS02895at 615.862 kb on + strand, within A4249_RS02895at 615.862 kb on + strand, within A4249_RS02895at 615.863 kb on - strand, within A4249_RS02895at 615.863 kb on - strand, within A4249_RS02895at 615.863 kb on - strand, within A4249_RS02895at 615.863 kb on - strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.237 kb on + strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.238 kb on - strand, within A4249_RS02895at 616.306 kb on + strand, within A4249_RS02895at 616.306 kb on + strand, within A4249_RS02895at 616.306 kb on + strand, within A4249_RS02895at 616.306 kb on + strand, within A4249_RS02895at 616.306 kb on + strand, within A4249_RS02895at 616.306 kb on + strand, within A4249_RS02895at 616.306 kb on + strand, within A4249_RS02895at 616.306 kb on + strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.307 kb on - strand, within A4249_RS02895at 616.441 kb on + strand, within A4249_RS02895at 616.441 kb on + strand, within A4249_RS02895at 616.442 kb on - strand, within A4249_RS02895at 616.543 kb on + strand, within A4249_RS02895at 616.543 kb on + strand, within A4249_RS02895at 616.543 kb on + strand, within A4249_RS02895at 616.609 kb on + strand, within A4249_RS02895at 616.957 kb on + strand, within A4249_RS02895at 616.957 kb on + strand, within A4249_RS02895at 616.957 kb on + strand, within A4249_RS02895at 616.957 kb on + strand, within A4249_RS02895at 616.957 kb on + strand, within A4249_RS02895at 616.958 kb on - strand, within A4249_RS02895at 617.161 kb on - strandat 617.183 kb on + strandat 617.184 kb on - strandat 617.239 kb on + strandat 617.239 kb on + strandat 617.239 kb on + strandat 617.239 kb on + strandat 617.240 kb on - strandat 617.240 kb on - strandat 617.240 kb on - strandat 617.240 kb on - strandat 617.240 kb on - strandat 617.240 kb on - strandat 617.278 kb on + strandat 617.326 kb on - strandat 617.348 kb on + strandat 617.349 kb on - strandat 617.546 kb on - strand, within A4249_RS02900at 617.653 kb on + strand, within A4249_RS02900at 617.653 kb on + strand, within A4249_RS02900at 617.653 kb on + strand, within A4249_RS02900at 617.653 kb on + strand, within A4249_RS02900at 617.654 kb on - strand, within A4249_RS02900at 617.654 kb on - strand, within A4249_RS02900at 617.654 kb on - strand, within A4249_RS02900at 617.654 kb on - strand, within A4249_RS02900at 617.654 kb on - strand, within A4249_RS02900at 617.654 kb on - strand, within A4249_RS02900at 617.654 kb on - strand, within A4249_RS02900at 617.654 kb on - strand, within A4249_RS02900at 617.654 kb on - strand, within A4249_RS02900at 617.727 kb on + strand, within A4249_RS02900at 617.728 kb on - strand, within A4249_RS02900at 617.728 kb on - strand, within A4249_RS02900

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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613,855 + A4249_RS02885 0.31 -0.1
613,855 + A4249_RS02885 0.31 -0.2
613,855 + A4249_RS02885 0.31 +0.2
613,856 - A4249_RS02885 0.31 -0.3
613,856 - A4249_RS02885 0.31 -0.5
613,909 + A4249_RS02885 0.36 -0.0
613,910 - A4249_RS02885 0.36 -0.4
613,910 - A4249_RS02885 0.36 -0.4
613,910 - A4249_RS02885 0.36 +0.4
613,910 - A4249_RS02885 0.36 -0.7
613,910 - A4249_RS02885 0.36 -0.3
613,918 + A4249_RS02885 0.37 +0.1
613,918 + A4249_RS02885 0.37 -0.3
613,918 + A4249_RS02885 0.37 -1.2
613,919 - A4249_RS02885 0.37 -1.1
614,130 + A4249_RS02885 0.57 -0.2
614,131 - A4249_RS02885 0.57 -0.0
614,131 - A4249_RS02885 0.57 -0.3
614,200 + A4249_RS02885 0.63 -0.1
614,200 + A4249_RS02885 0.63 +0.3
614,200 + A4249_RS02885 0.63 +0.8
614,200 + A4249_RS02885 0.63 +0.0
614,200 + A4249_RS02885 0.63 -0.6
614,200 + A4249_RS02885 0.63 -0.1
614,200 + A4249_RS02885 0.63 +0.3
614,200 + A4249_RS02885 0.63 +0.3
614,201 - A4249_RS02885 0.63 -1.3
614,201 - A4249_RS02885 0.63 +0.4
614,201 - A4249_RS02885 0.63 -2.0
614,201 - A4249_RS02885 0.63 -0.5
614,201 - A4249_RS02885 0.63 -0.8
614,201 - A4249_RS02885 0.63 -0.7
614,201 - A4249_RS02885 0.63 -0.4
614,201 - A4249_RS02885 0.63 -0.7
614,308 + A4249_RS02885 0.73 +0.3
614,308 + A4249_RS02885 0.73 -0.5
614,309 - A4249_RS02885 0.73 -0.3
614,589 + -0.8
614,589 + -0.2
614,589 + -0.0
614,589 + +0.0
614,589 + +0.2
614,590 - -0.2
614,590 - +0.2
614,590 - -0.1
614,590 - +0.6
614,590 - -0.7
614,611 + -1.1
614,774 + -0.3
614,774 + +0.1
614,774 + +0.3
614,774 + +0.0
614,775 - +0.6
614,775 - -0.2
614,775 - +0.8
614,884 + +0.1
614,884 + -0.5
614,884 + +0.8
614,884 + -0.0
614,885 - -1.3
614,885 - -0.1
614,885 - +0.4
615,086 + A4249_RS02895 0.11 +0.1
615,087 - A4249_RS02895 0.11 +0.1
615,093 - A4249_RS02895 0.11 +0.6
615,106 + A4249_RS02895 0.12 +1.3
615,106 + A4249_RS02895 0.12 -0.1
615,106 + A4249_RS02895 0.12 +0.2
615,107 - A4249_RS02895 0.12 -0.2
615,416 - A4249_RS02895 0.25 +0.0
615,416 - A4249_RS02895 0.25 -0.3
615,416 - A4249_RS02895 0.25 +0.1
615,800 - A4249_RS02895 0.40 +0.3
615,862 + A4249_RS02895 0.43 +0.2
615,862 + A4249_RS02895 0.43 -0.7
615,862 + A4249_RS02895 0.43 -0.1
615,862 + A4249_RS02895 0.43 +0.3
615,863 - A4249_RS02895 0.43 +0.3
615,863 - A4249_RS02895 0.43 +0.5
615,863 - A4249_RS02895 0.43 -0.4
615,863 - A4249_RS02895 0.43 -1.5
616,237 + A4249_RS02895 0.58 -0.3
616,237 + A4249_RS02895 0.58 -0.2
616,237 + A4249_RS02895 0.58 +0.7
616,237 + A4249_RS02895 0.58 +0.2
616,237 + A4249_RS02895 0.58 -0.2
616,237 + A4249_RS02895 0.58 +0.7
616,237 + A4249_RS02895 0.58 +0.3
616,237 + A4249_RS02895 0.58 -0.2
616,237 + A4249_RS02895 0.58 -0.1
616,237 + A4249_RS02895 0.58 +0.6
616,237 + A4249_RS02895 0.58 +0.1
616,237 + A4249_RS02895 0.58 +0.3
616,237 + A4249_RS02895 0.58 -1.4
616,237 + A4249_RS02895 0.58 +0.6
616,238 - A4249_RS02895 0.58 +0.5
616,238 - A4249_RS02895 0.58 -0.3
616,238 - A4249_RS02895 0.58 -0.5
616,238 - A4249_RS02895 0.58 -1.5
616,238 - A4249_RS02895 0.58 +0.2
616,238 - A4249_RS02895 0.58 -0.2
616,238 - A4249_RS02895 0.58 -0.9
616,238 - A4249_RS02895 0.58 -0.1
616,238 - A4249_RS02895 0.58 -0.0
616,238 - A4249_RS02895 0.58 +0.1
616,238 - A4249_RS02895 0.58 +0.0
616,238 - A4249_RS02895 0.58 +0.1
616,238 - A4249_RS02895 0.58 +0.9
616,238 - A4249_RS02895 0.58 -0.8
616,306 + A4249_RS02895 0.61 -0.1
616,306 + A4249_RS02895 0.61 -0.3
616,306 + A4249_RS02895 0.61 +1.4
616,306 + A4249_RS02895 0.61 +1.3
616,306 + A4249_RS02895 0.61 -0.7
616,306 + A4249_RS02895 0.61 -0.4
616,306 + A4249_RS02895 0.61 -0.5
616,306 + A4249_RS02895 0.61 -0.2
616,307 - A4249_RS02895 0.61 +0.7
616,307 - A4249_RS02895 0.61 -0.4
616,307 - A4249_RS02895 0.61 +0.3
616,307 - A4249_RS02895 0.61 -1.4
616,307 - A4249_RS02895 0.61 +0.1
616,307 - A4249_RS02895 0.61 +0.5
616,307 - A4249_RS02895 0.61 -0.0
616,307 - A4249_RS02895 0.61 +0.4
616,307 - A4249_RS02895 0.61 +0.4
616,307 - A4249_RS02895 0.61 +0.4
616,307 - A4249_RS02895 0.61 -0.5
616,441 + A4249_RS02895 0.67 +0.5
616,441 + A4249_RS02895 0.67 +0.0
616,442 - A4249_RS02895 0.67 +0.3
616,543 + A4249_RS02895 0.71 -0.4
616,543 + A4249_RS02895 0.71 +0.0
616,543 + A4249_RS02895 0.71 -0.3
616,609 + A4249_RS02895 0.74 -1.0
616,957 + A4249_RS02895 0.88 -0.2
616,957 + A4249_RS02895 0.88 +0.1
616,957 + A4249_RS02895 0.88 +0.3
616,957 + A4249_RS02895 0.88 -1.0
616,957 + A4249_RS02895 0.88 -0.1
616,958 - A4249_RS02895 0.88 +0.4
617,161 - -0.3
617,183 + +0.3
617,184 - -1.5
617,239 + +0.5
617,239 + +0.5
617,239 + +0.2
617,239 + -0.2
617,240 - -0.3
617,240 - -0.1
617,240 - +0.6
617,240 - +0.8
617,240 - -0.2
617,240 - -0.5
617,278 + -0.3
617,326 - -0.3
617,348 + -0.1
617,349 - -0.2
617,546 - A4249_RS02900 0.35 -0.4
617,653 + A4249_RS02900 0.54 -0.3
617,653 + A4249_RS02900 0.54 -0.2
617,653 + A4249_RS02900 0.54 -0.8
617,653 + A4249_RS02900 0.54 +0.4
617,654 - A4249_RS02900 0.55 +0.5
617,654 - A4249_RS02900 0.55 +0.4
617,654 - A4249_RS02900 0.55 -0.7
617,654 - A4249_RS02900 0.55 +0.2
617,654 - A4249_RS02900 0.55 -0.9
617,654 - A4249_RS02900 0.55 +0.5
617,654 - A4249_RS02900 0.55 -0.1
617,654 - A4249_RS02900 0.55 +0.3
617,654 - A4249_RS02900 0.55 +0.2
617,727 + A4249_RS02900 0.68 -0.7
617,728 - A4249_RS02900 0.68 +0.5
617,728 - A4249_RS02900 0.68 +2.0

Or see this region's nucleotide sequence