Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01565

Experiment: Adenine 0.74 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01560 and A4249_RS01565 are separated by 107 nucleotidesA4249_RS01565 and A4249_RS01570 are separated by 20 nucleotides A4249_RS01560: A4249_RS01560 - histidine kinase dimerization/phosphoacceptor domain -containing protein, at 292,890 to 293,984 _RS01560 A4249_RS01565: A4249_RS01565 - DciA family protein, at 294,092 to 294,646 _RS01565 A4249_RS01570: A4249_RS01570 - A/G-specific adenine glycosylase, at 294,667 to 295,716 _RS01570 Position (kb) 294 295Strain fitness (log2 ratio) -2 -1 0 1at 293.267 kb on + strand, within A4249_RS01560at 293.267 kb on + strand, within A4249_RS01560at 293.267 kb on + strand, within A4249_RS01560at 293.267 kb on + strand, within A4249_RS01560at 293.268 kb on - strand, within A4249_RS01560at 293.268 kb on - strand, within A4249_RS01560at 293.308 kb on + strand, within A4249_RS01560at 293.308 kb on + strand, within A4249_RS01560at 293.308 kb on + strand, within A4249_RS01560at 293.308 kb on + strand, within A4249_RS01560at 293.308 kb on + strand, within A4249_RS01560at 293.309 kb on - strand, within A4249_RS01560at 293.309 kb on - strand, within A4249_RS01560at 293.309 kb on - strand, within A4249_RS01560at 293.309 kb on - strand, within A4249_RS01560at 293.309 kb on - strand, within A4249_RS01560at 293.554 kb on + strand, within A4249_RS01560at 293.554 kb on + strand, within A4249_RS01560at 293.554 kb on + strand, within A4249_RS01560at 293.554 kb on + strand, within A4249_RS01560at 293.554 kb on + strand, within A4249_RS01560at 293.554 kb on + strand, within A4249_RS01560at 293.554 kb on + strand, within A4249_RS01560at 293.555 kb on - strand, within A4249_RS01560at 293.555 kb on - strand, within A4249_RS01560at 293.555 kb on - strand, within A4249_RS01560at 293.555 kb on - strand, within A4249_RS01560at 293.555 kb on - strand, within A4249_RS01560at 293.555 kb on - strand, within A4249_RS01560at 293.555 kb on - strand, within A4249_RS01560at 293.605 kb on + strand, within A4249_RS01560at 293.605 kb on + strand, within A4249_RS01560at 293.605 kb on + strand, within A4249_RS01560at 293.606 kb on - strand, within A4249_RS01560at 293.606 kb on - strand, within A4249_RS01560at 293.680 kb on + strand, within A4249_RS01560at 293.680 kb on + strand, within A4249_RS01560at 293.680 kb on + strand, within A4249_RS01560at 293.849 kb on + strand, within A4249_RS01560at 293.849 kb on + strand, within A4249_RS01560at 293.904 kb on + strandat 293.905 kb on - strandat 293.955 kb on + strandat 293.957 kb on + strandat 293.958 kb on - strandat 293.958 kb on - strandat 293.958 kb on - strandat 293.958 kb on - strandat 293.958 kb on - strandat 293.997 kb on + strandat 293.997 kb on + strandat 293.997 kb on + strandat 293.998 kb on - strandat 294.028 kb on + strandat 294.029 kb on - strandat 294.029 kb on - strandat 294.040 kb on + strandat 294.040 kb on + strandat 294.040 kb on + strandat 294.040 kb on + strandat 294.041 kb on - strandat 294.041 kb on - strandat 294.041 kb on - strandat 294.041 kb on - strandat 294.041 kb on - strandat 294.041 kb on - strandat 294.041 kb on - strandat 294.053 kb on + strandat 294.054 kb on - strandat 294.054 kb on - strandat 294.652 kb on + strandat 294.652 kb on + strandat 294.652 kb on + strandat 294.652 kb on + strandat 294.652 kb on + strandat 294.652 kb on + strandat 294.652 kb on + strandat 294.652 kb on + strandat 294.652 kb on + strandat 294.652 kb on + strandat 294.652 kb on + strandat 294.653 kb on - strandat 294.653 kb on - strandat 294.653 kb on - strandat 294.653 kb on - strandat 294.653 kb on - strandat 294.653 kb on - strandat 294.653 kb on - strandat 294.653 kb on - strandat 294.653 kb on - strandat 294.653 kb on - strandat 294.654 kb on + strandat 294.654 kb on + strandat 294.654 kb on + strandat 294.654 kb on + strandat 294.654 kb on + strandat 294.654 kb on + strandat 294.654 kb on + strandat 294.654 kb on + strandat 294.654 kb on + strandat 294.654 kb on + strandat 294.655 kb on - strandat 294.655 kb on - strandat 294.655 kb on - strandat 294.655 kb on - strandat 294.655 kb on - strandat 294.655 kb on - strandat 294.656 kb on + strandat 294.656 kb on + strandat 294.656 kb on + strandat 294.656 kb on + strandat 294.657 kb on - strandat 294.657 kb on - strandat 294.657 kb on - strandat 294.657 kb on - strandat 294.657 kb on - strandat 294.689 kb on + strandat 294.689 kb on + strandat 294.689 kb on + strandat 294.689 kb on + strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.690 kb on - strandat 294.721 kb on + strandat 294.844 kb on + strand, within A4249_RS01570at 294.845 kb on - strand, within A4249_RS01570at 294.845 kb on - strand, within A4249_RS01570at 294.937 kb on + strand, within A4249_RS01570at 294.937 kb on + strand, within A4249_RS01570at 294.937 kb on + strand, within A4249_RS01570at 294.937 kb on + strand, within A4249_RS01570at 294.937 kb on + strand, within A4249_RS01570at 294.937 kb on + strand, within A4249_RS01570at 294.938 kb on - strand, within A4249_RS01570at 294.938 kb on - strand, within A4249_RS01570at 294.940 kb on + strand, within A4249_RS01570at 294.940 kb on + strand, within A4249_RS01570at 294.940 kb on + strand, within A4249_RS01570at 294.940 kb on + strand, within A4249_RS01570at 294.940 kb on + strand, within A4249_RS01570at 294.940 kb on + strand, within A4249_RS01570at 294.940 kb on + strand, within A4249_RS01570at 294.940 kb on + strand, within A4249_RS01570at 294.940 kb on + strand, within A4249_RS01570at 294.941 kb on - strand, within A4249_RS01570at 294.941 kb on - strand, within A4249_RS01570at 294.941 kb on - strand, within A4249_RS01570at 294.941 kb on - strand, within A4249_RS01570at 295.051 kb on + strand, within A4249_RS01570at 295.051 kb on + strand, within A4249_RS01570at 295.051 kb on + strand, within A4249_RS01570at 295.051 kb on + strand, within A4249_RS01570at 295.393 kb on + strand, within A4249_RS01570at 295.393 kb on + strand, within A4249_RS01570at 295.393 kb on + strand, within A4249_RS01570at 295.394 kb on - strand, within A4249_RS01570at 295.394 kb on - strand, within A4249_RS01570at 295.394 kb on - strand, within A4249_RS01570at 295.494 kb on - strand, within A4249_RS01570at 295.494 kb on - strand, within A4249_RS01570at 295.577 kb on + strand, within A4249_RS01570at 295.577 kb on + strand, within A4249_RS01570at 295.577 kb on + strand, within A4249_RS01570at 295.578 kb on - strand, within A4249_RS01570

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Per-strain Table

Position Strand Gene LocusTag Fraction Adenine 0.74 mM (C)
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293,267 + A4249_RS01560 0.34 +1.2
293,267 + A4249_RS01560 0.34 +0.5
293,267 + A4249_RS01560 0.34 +0.3
293,267 + A4249_RS01560 0.34 +0.2
293,268 - A4249_RS01560 0.35 -0.4
293,268 - A4249_RS01560 0.35 -1.5
293,308 + A4249_RS01560 0.38 -0.3
293,308 + A4249_RS01560 0.38 -0.1
293,308 + A4249_RS01560 0.38 +0.1
293,308 + A4249_RS01560 0.38 -0.1
293,308 + A4249_RS01560 0.38 -0.7
293,309 - A4249_RS01560 0.38 +0.6
293,309 - A4249_RS01560 0.38 +0.7
293,309 - A4249_RS01560 0.38 +0.1
293,309 - A4249_RS01560 0.38 +0.6
293,309 - A4249_RS01560 0.38 +0.3
293,554 + A4249_RS01560 0.61 -1.2
293,554 + A4249_RS01560 0.61 +0.4
293,554 + A4249_RS01560 0.61 -0.1
293,554 + A4249_RS01560 0.61 +0.4
293,554 + A4249_RS01560 0.61 +0.2
293,554 + A4249_RS01560 0.61 -0.1
293,554 + A4249_RS01560 0.61 +0.1
293,555 - A4249_RS01560 0.61 +0.1
293,555 - A4249_RS01560 0.61 +0.2
293,555 - A4249_RS01560 0.61 +0.1
293,555 - A4249_RS01560 0.61 +1.2
293,555 - A4249_RS01560 0.61 +0.2
293,555 - A4249_RS01560 0.61 +0.3
293,555 - A4249_RS01560 0.61 -0.9
293,605 + A4249_RS01560 0.65 +0.1
293,605 + A4249_RS01560 0.65 +1.0
293,605 + A4249_RS01560 0.65 +0.3
293,606 - A4249_RS01560 0.65 -0.3
293,606 - A4249_RS01560 0.65 -0.1
293,680 + A4249_RS01560 0.72 +0.5
293,680 + A4249_RS01560 0.72 -0.6
293,680 + A4249_RS01560 0.72 +0.0
293,849 + A4249_RS01560 0.88 +0.8
293,849 + A4249_RS01560 0.88 -0.2
293,904 + +0.3
293,905 - +0.1
293,955 + -2.2
293,957 + +0.6
293,958 - -0.1
293,958 - +0.0
293,958 - -0.0
293,958 - -0.9
293,958 - -0.0
293,997 + +0.3
293,997 + -1.1
293,997 + +0.5
293,998 - -0.0
294,028 + -0.0
294,029 - +0.6
294,029 - -0.0
294,040 + -0.7
294,040 + -0.0
294,040 + +0.2
294,040 + -0.7
294,041 - -0.5
294,041 - +0.1
294,041 - -0.4
294,041 - -0.0
294,041 - -1.9
294,041 - -1.2
294,041 - +0.8
294,053 + -0.5
294,054 - -0.1
294,054 - -0.2
294,652 + +1.1
294,652 + -0.8
294,652 + -0.8
294,652 + +0.3
294,652 + +0.5
294,652 + +0.9
294,652 + -1.5
294,652 + +0.3
294,652 + +0.3
294,652 + -0.0
294,652 + +0.2
294,653 - -0.3
294,653 - -0.8
294,653 - +1.0
294,653 - -0.2
294,653 - +0.4
294,653 - +0.2
294,653 - -0.3
294,653 - -0.3
294,653 - -0.5
294,653 - -0.1
294,654 + -0.6
294,654 + -0.2
294,654 + -0.3
294,654 + -1.0
294,654 + -0.9
294,654 + -0.2
294,654 + -0.3
294,654 + -0.3
294,654 + -0.0
294,654 + -0.6
294,655 - -0.3
294,655 - -0.2
294,655 - -0.1
294,655 - -0.1
294,655 - -0.2
294,655 - -0.2
294,656 + +0.3
294,656 + -0.9
294,656 + +0.1
294,656 + -0.4
294,657 - -0.5
294,657 - -0.1
294,657 - -0.7
294,657 - -0.3
294,657 - +1.0
294,689 + +0.8
294,689 + -0.0
294,689 + +0.0
294,689 + -0.8
294,690 - +0.0
294,690 - -1.2
294,690 - -0.1
294,690 - -1.0
294,690 - -0.4
294,690 - +0.3
294,690 - -1.0
294,690 - +0.5
294,690 - -0.0
294,690 - +0.2
294,690 - -0.9
294,690 - +0.6
294,721 + -0.5
294,844 + A4249_RS01570 0.17 +0.1
294,845 - A4249_RS01570 0.17 +0.6
294,845 - A4249_RS01570 0.17 -1.2
294,937 + A4249_RS01570 0.26 -0.9
294,937 + A4249_RS01570 0.26 +0.0
294,937 + A4249_RS01570 0.26 -0.2
294,937 + A4249_RS01570 0.26 +0.3
294,937 + A4249_RS01570 0.26 -0.2
294,937 + A4249_RS01570 0.26 -0.1
294,938 - A4249_RS01570 0.26 +0.4
294,938 - A4249_RS01570 0.26 -0.0
294,940 + A4249_RS01570 0.26 -0.0
294,940 + A4249_RS01570 0.26 -0.0
294,940 + A4249_RS01570 0.26 +0.1
294,940 + A4249_RS01570 0.26 -0.4
294,940 + A4249_RS01570 0.26 -1.2
294,940 + A4249_RS01570 0.26 +0.2
294,940 + A4249_RS01570 0.26 -1.7
294,940 + A4249_RS01570 0.26 -0.2
294,940 + A4249_RS01570 0.26 +0.7
294,941 - A4249_RS01570 0.26 +0.3
294,941 - A4249_RS01570 0.26 +0.3
294,941 - A4249_RS01570 0.26 +0.1
294,941 - A4249_RS01570 0.26 -0.2
295,051 + A4249_RS01570 0.37 -0.7
295,051 + A4249_RS01570 0.37 -0.3
295,051 + A4249_RS01570 0.37 +0.7
295,051 + A4249_RS01570 0.37 +1.0
295,393 + A4249_RS01570 0.69 -0.2
295,393 + A4249_RS01570 0.69 -0.4
295,393 + A4249_RS01570 0.69 -0.1
295,394 - A4249_RS01570 0.69 -0.2
295,394 - A4249_RS01570 0.69 +0.6
295,394 - A4249_RS01570 0.69 -0.3
295,494 - A4249_RS01570 0.79 +0.4
295,494 - A4249_RS01570 0.79 -0.6
295,577 + A4249_RS01570 0.87 -1.1
295,577 + A4249_RS01570 0.87 -0.3
295,577 + A4249_RS01570 0.87 -0.4
295,578 - A4249_RS01570 0.87 -0.4

Or see this region's nucleotide sequence