Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt eptO and tnp-IS911 are separated by 178 nucleotides tnp-IS911 and tnp-IS3 are separated by 212 nucleotides
JDDGAC_29880: eptO - GspS family T2SS pilot lipoprotein variant EptO, at 45 to 443
eptO
JDDGAC_29885: tnp-IS911 - IS3 family IS911 transposase, at 622 to 927
tnp-IS911
JDDGAC_29890: tnp-IS3 - IS3 family transposase, at 1,140 to 1,793
tnp-IS3
Position (kb) 0
1 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 0.033 kb on + strand at 0.034 kb on - strand at 0.037 kb on - strand at 0.054 kb on - strand at 0.085 kb on + strand, within eptO at 0.088 kb on + strand, within eptO at 0.094 kb on + strand, within eptO at 0.095 kb on - strand, within eptO at 0.101 kb on + strand, within eptO at 0.218 kb on + strand, within eptO at 0.219 kb on - strand, within eptO at 0.219 kb on - strand, within eptO at 0.225 kb on - strand, within eptO at 0.254 kb on - strand, within eptO at 0.313 kb on + strand, within eptO at 0.313 kb on + strand, within eptO at 0.313 kb on + strand, within eptO at 0.313 kb on + strand, within eptO at 0.314 kb on - strand, within eptO at 0.314 kb on - strand, within eptO at 0.314 kb on - strand, within eptO at 0.314 kb on - strand, within eptO at 0.332 kb on + strand, within eptO at 0.332 kb on + strand, within eptO at 0.332 kb on + strand, within eptO at 0.332 kb on + strand, within eptO at 0.333 kb on - strand, within eptO at 0.333 kb on - strand, within eptO at 0.336 kb on + strand, within eptO at 0.336 kb on + strand, within eptO at 0.336 kb on + strand, within eptO at 0.336 kb on + strand, within eptO at 0.337 kb on - strand, within eptO at 0.337 kb on - strand, within eptO at 0.337 kb on - strand, within eptO at 0.337 kb on - strand, within eptO at 0.337 kb on - strand, within eptO at 0.337 kb on - strand, within eptO at 0.369 kb on + strand, within eptO at 0.369 kb on + strand, within eptO at 0.371 kb on + strand, within eptO at 0.373 kb on + strand, within eptO at 0.373 kb on + strand, within eptO at 0.373 kb on + strand, within eptO at 0.373 kb on + strand, within eptO at 0.374 kb on - strand, within eptO at 0.374 kb on - strand, within eptO at 0.374 kb on - strand, within eptO at 0.445 kb on - strand at 0.445 kb on - strand at 0.472 kb on + strand at 0.492 kb on + strand at 0.526 kb on - strand at 0.526 kb on - strand at 0.552 kb on + strand at 0.553 kb on - strand at 0.590 kb on + strand at 0.591 kb on - strand at 0.652 kb on - strand at 0.688 kb on + strand, within tnp-IS911 at 0.689 kb on - strand, within tnp-IS911 at 0.714 kb on + strand, within tnp-IS911 at 0.996 kb on + strand at 0.996 kb on + strand at 0.996 kb on + strand at 0.996 kb on + strand at 1.002 kb on + strand at 1.002 kb on + strand at 1.045 kb on + strand at 1.049 kb on - strand at 1.049 kb on - strand at 1.311 kb on + strand, within tnp-IS3 at 1.312 kb on - strand, within tnp-IS3 at 1.338 kb on + strand, within tnp-IS3 at 1.338 kb on + strand, within tnp-IS3 at 1.339 kb on - strand, within tnp-IS3
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 33 + +1.3 34 - +0.4 37 - -3.0 54 - +0.9 85 + eptO JDDGAC_29880 0.10 +1.2 88 + eptO JDDGAC_29880 0.11 -1.3 94 + eptO JDDGAC_29880 0.12 +0.6 95 - eptO JDDGAC_29880 0.13 -1.3 101 + eptO JDDGAC_29880 0.14 +1.9 218 + eptO JDDGAC_29880 0.43 -0.4 219 - eptO JDDGAC_29880 0.44 +0.7 219 - eptO JDDGAC_29880 0.44 -1.7 225 - eptO JDDGAC_29880 0.45 -2.4 254 - eptO JDDGAC_29880 0.52 -0.3 313 + eptO JDDGAC_29880 0.67 +0.1 313 + eptO JDDGAC_29880 0.67 -2.5 313 + eptO JDDGAC_29880 0.67 -1.4 313 + eptO JDDGAC_29880 0.67 +0.2 314 - eptO JDDGAC_29880 0.67 +0.6 314 - eptO JDDGAC_29880 0.67 +0.2 314 - eptO JDDGAC_29880 0.67 -0.6 314 - eptO JDDGAC_29880 0.67 +2.0 332 + eptO JDDGAC_29880 0.72 -1.0 332 + eptO JDDGAC_29880 0.72 +0.1 332 + eptO JDDGAC_29880 0.72 +1.6 332 + eptO JDDGAC_29880 0.72 -0.7 333 - eptO JDDGAC_29880 0.72 -1.4 333 - eptO JDDGAC_29880 0.72 -0.4 336 + eptO JDDGAC_29880 0.73 -0.5 336 + eptO JDDGAC_29880 0.73 -3.1 336 + eptO JDDGAC_29880 0.73 -0.5 336 + eptO JDDGAC_29880 0.73 +0.1 337 - eptO JDDGAC_29880 0.73 -0.6 337 - eptO JDDGAC_29880 0.73 +1.2 337 - eptO JDDGAC_29880 0.73 +0.7 337 - eptO JDDGAC_29880 0.73 +0.2 337 - eptO JDDGAC_29880 0.73 +0.9 337 - eptO JDDGAC_29880 0.73 +0.3 369 + eptO JDDGAC_29880 0.81 +0.4 369 + eptO JDDGAC_29880 0.81 -0.5 371 + eptO JDDGAC_29880 0.82 -0.4 373 + eptO JDDGAC_29880 0.82 -0.2 373 + eptO JDDGAC_29880 0.82 +0.9 373 + eptO JDDGAC_29880 0.82 -2.5 373 + eptO JDDGAC_29880 0.82 +0.0 374 - eptO JDDGAC_29880 0.82 +1.9 374 - eptO JDDGAC_29880 0.82 -0.4 374 - eptO JDDGAC_29880 0.82 -3.2 445 - +1.1 445 - -2.1 472 + -3.9 492 + -2.1 526 - +0.5 526 - +0.1 552 + -1.6 553 - -0.4 590 + +0.4 591 - -0.4 652 - +1.0 688 + tnp-IS911 JDDGAC_29885 0.22 +0.1 689 - tnp-IS911 JDDGAC_29885 0.22 -2.0 714 + tnp-IS911 JDDGAC_29885 0.30 -1.7 996 + -2.5 996 + -0.2 996 + +1.1 996 + +1.9 1,002 + +0.8 1,002 + +0.8 1,045 + -2.4 1,049 - -0.7 1,049 - +0.4 1,311 + tnp-IS3 JDDGAC_29890 0.26 -0.1 1,312 - tnp-IS3 JDDGAC_29890 0.26 +0.6 1,338 + tnp-IS3 JDDGAC_29890 0.30 -2.3 1,338 + tnp-IS3 JDDGAC_29890 0.30 +1.0 1,339 - tnp-IS3 JDDGAC_29890 0.30 -0.7
Or see this region's nucleotide sequence