Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_29070 and JDDGAC_29075 overlap by 8 nucleotides JDDGAC_29075 and JDDGAC_29080 overlap by 1 nucleotides JDDGAC_29080 and JDDGAC_29085 are separated by 16 nucleotides JDDGAC_29085 and JDDGAC_29090 are separated by 107 nucleotides JDDGAC_29090 and JDDGAC_29095 overlap by 11 nucleotides
JDDGAC_29070: JDDGAC_29070 - phage tail tape measure protein, at 5,545,070 to 5,548,312
_29070
JDDGAC_29075: JDDGAC_29075 - phage tail protein, at 5,548,305 to 5,548,646
_29075
JDDGAC_29080: JDDGAC_29080 - phage minor tail protein L, at 5,548,646 to 5,549,344
_29080
JDDGAC_29085: JDDGAC_29085 - DNA-binding protein, at 5,549,361 to 5,549,681
_29085
JDDGAC_29090: JDDGAC_29090 - toxin-antitoxin system HicB family antitoxin, at 5,549,789 to 5,549,962
_29090
JDDGAC_29095: JDDGAC_29095 - phage antirepressor Ant, at 5,549,952 to 5,550,956
_29095
Position (kb) 5548
5549
5550 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5548.654 kb on + strand at 5548.654 kb on + strand at 5549.350 kb on + strand at 5549.383 kb on - strand at 5549.784 kb on - strand at 5549.784 kb on - strand at 5549.890 kb on + strand, within JDDGAC_29090 at 5549.890 kb on + strand, within JDDGAC_29090 at 5549.890 kb on + strand, within JDDGAC_29090 at 5549.891 kb on - strand, within JDDGAC_29090 at 5549.891 kb on - strand, within JDDGAC_29090 at 5549.891 kb on - strand, within JDDGAC_29090 at 5549.892 kb on + strand, within JDDGAC_29090 at 5550.003 kb on - strand at 5550.033 kb on - strand at 5550.039 kb on - strand at 5550.043 kb on + strand at 5550.128 kb on + strand, within JDDGAC_29095 at 5550.223 kb on + strand, within JDDGAC_29095
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 5,548,654 + +0.1 5,548,654 + -0.4 5,549,350 + -1.3 5,549,383 - -0.3 5,549,784 - +0.7 5,549,784 - +0.9 5,549,890 + JDDGAC_29090 0.58 +0.9 5,549,890 + JDDGAC_29090 0.58 -0.2 5,549,890 + JDDGAC_29090 0.58 -2.5 5,549,891 - JDDGAC_29090 0.59 -0.4 5,549,891 - JDDGAC_29090 0.59 -3.0 5,549,891 - JDDGAC_29090 0.59 +1.0 5,549,892 + JDDGAC_29090 0.59 -0.5 5,550,003 - -0.7 5,550,033 - +0.7 5,550,039 - -1.5 5,550,043 + +1.1 5,550,128 + JDDGAC_29095 0.18 +0.4 5,550,223 + JDDGAC_29095 0.27 +0.6
Or see this region's nucleotide sequence