Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt manC and cpsG are separated by 192 nucleotides cpsG and wcaJ are separated by 54 nucleotides
JDDGAC_28475: manC - mannose-1-phosphate guanylyltransferase ManC, at 5,459,344 to 5,460,780
manC
JDDGAC_28480: cpsG - colanic acid biosynthesis phosphomannomutase CpsG, at 5,460,973 to 5,462,343
cpsG
JDDGAC_28485: wcaJ - undecaprenyl-phosphate glucose phosphotransferase, at 5,462,398 to 5,463,792
wcaJ
Position (kb) 5460
5461
5462
5463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5460.277 kb on + strand, within manC at 5460.277 kb on + strand, within manC at 5460.277 kb on + strand, within manC at 5460.277 kb on + strand, within manC at 5460.277 kb on + strand, within manC at 5460.277 kb on + strand, within manC at 5460.277 kb on + strand, within manC at 5460.277 kb on + strand, within manC at 5460.278 kb on - strand, within manC at 5460.278 kb on - strand, within manC at 5460.278 kb on - strand, within manC at 5460.278 kb on - strand, within manC at 5460.283 kb on + strand, within manC at 5460.283 kb on + strand, within manC at 5460.283 kb on + strand, within manC at 5460.284 kb on - strand, within manC at 5460.452 kb on - strand, within manC at 5460.469 kb on + strand, within manC at 5460.648 kb on + strand at 5460.704 kb on + strand at 5460.779 kb on - strand at 5460.833 kb on + strand at 5460.904 kb on + strand at 5460.905 kb on - strand at 5460.905 kb on - strand at 5460.950 kb on - strand at 5461.001 kb on - strand at 5461.213 kb on + strand, within cpsG at 5461.282 kb on + strand, within cpsG at 5461.458 kb on + strand, within cpsG at 5461.552 kb on - strand, within cpsG at 5461.620 kb on + strand, within cpsG at 5461.675 kb on - strand, within cpsG at 5461.762 kb on + strand, within cpsG at 5461.765 kb on + strand, within cpsG at 5461.765 kb on + strand, within cpsG at 5461.972 kb on + strand, within cpsG at 5461.973 kb on - strand, within cpsG at 5462.373 kb on + strand at 5462.384 kb on + strand at 5462.452 kb on - strand at 5462.452 kb on - strand at 5462.534 kb on - strand at 5462.667 kb on - strand, within wcaJ at 5462.743 kb on + strand, within wcaJ at 5462.784 kb on + strand, within wcaJ at 5462.821 kb on + strand, within wcaJ at 5462.823 kb on + strand, within wcaJ at 5462.824 kb on - strand, within wcaJ at 5462.856 kb on - strand, within wcaJ at 5462.997 kb on + strand, within wcaJ at 5463.016 kb on - strand, within wcaJ at 5463.181 kb on + strand, within wcaJ
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 5,460,277 + manC JDDGAC_28475 0.65 +0.7 5,460,277 + manC JDDGAC_28475 0.65 -0.5 5,460,277 + manC JDDGAC_28475 0.65 -0.6 5,460,277 + manC JDDGAC_28475 0.65 -1.9 5,460,277 + manC JDDGAC_28475 0.65 -0.8 5,460,277 + manC JDDGAC_28475 0.65 -0.8 5,460,277 + manC JDDGAC_28475 0.65 -1.2 5,460,277 + manC JDDGAC_28475 0.65 +0.6 5,460,278 - manC JDDGAC_28475 0.65 +1.1 5,460,278 - manC JDDGAC_28475 0.65 -0.5 5,460,278 - manC JDDGAC_28475 0.65 +0.7 5,460,278 - manC JDDGAC_28475 0.65 -1.2 5,460,283 + manC JDDGAC_28475 0.65 +2.0 5,460,283 + manC JDDGAC_28475 0.65 +0.1 5,460,283 + manC JDDGAC_28475 0.65 +1.0 5,460,284 - manC JDDGAC_28475 0.65 +0.8 5,460,452 - manC JDDGAC_28475 0.77 +0.7 5,460,469 + manC JDDGAC_28475 0.78 -1.7 5,460,648 + +1.0 5,460,704 + +1.7 5,460,779 - -0.1 5,460,833 + -0.9 5,460,904 + -3.2 5,460,905 - -0.4 5,460,905 - -0.1 5,460,950 - -0.1 5,461,001 - -2.1 5,461,213 + cpsG JDDGAC_28480 0.18 +2.2 5,461,282 + cpsG JDDGAC_28480 0.23 -1.5 5,461,458 + cpsG JDDGAC_28480 0.35 -0.2 5,461,552 - cpsG JDDGAC_28480 0.42 -2.3 5,461,620 + cpsG JDDGAC_28480 0.47 +2.2 5,461,675 - cpsG JDDGAC_28480 0.51 +2.1 5,461,762 + cpsG JDDGAC_28480 0.58 -2.0 5,461,765 + cpsG JDDGAC_28480 0.58 -1.4 5,461,765 + cpsG JDDGAC_28480 0.58 -0.2 5,461,972 + cpsG JDDGAC_28480 0.73 +1.8 5,461,973 - cpsG JDDGAC_28480 0.73 +0.5 5,462,373 + +0.3 5,462,384 + +0.8 5,462,452 - -0.0 5,462,452 - -3.3 5,462,534 - -2.7 5,462,667 - wcaJ JDDGAC_28485 0.19 -0.5 5,462,743 + wcaJ JDDGAC_28485 0.25 -2.0 5,462,784 + wcaJ JDDGAC_28485 0.28 +0.2 5,462,821 + wcaJ JDDGAC_28485 0.30 +0.8 5,462,823 + wcaJ JDDGAC_28485 0.30 -1.3 5,462,824 - wcaJ JDDGAC_28485 0.31 +2.4 5,462,856 - wcaJ JDDGAC_28485 0.33 -0.1 5,462,997 + wcaJ JDDGAC_28485 0.43 +1.7 5,463,016 - wcaJ JDDGAC_28485 0.44 -1.3 5,463,181 + wcaJ JDDGAC_28485 0.56 -0.7
Or see this region's nucleotide sequence