Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yehB and JDDGAC_28145 are separated by 10 nucleotides JDDGAC_28145 and rcnB are separated by 81 nucleotides rcnB and rcnA are separated by 217 nucleotides
JDDGAC_28140: yehB - Outer membrane usher protein YehB, at 5,392,591 to 5,395,071
yehB
JDDGAC_28145: JDDGAC_28145 - pilus assembly protein, at 5,395,082 to 5,396,116
_28145
JDDGAC_28150: rcnB - Ni(II)/Co(II) efflux transporter accessory subunit RcnB, at 5,396,198 to 5,396,536
rcnB
JDDGAC_28155: rcnA - nickel/cobalt efflux protein RcnA, at 5,396,754 to 5,397,605
rcnA
Position (kb) 5395
5396
5397 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5394.106 kb on - strand, within yehB at 5394.121 kb on + strand, within yehB at 5394.164 kb on - strand, within yehB at 5394.190 kb on + strand, within yehB at 5394.190 kb on + strand, within yehB at 5394.308 kb on + strand, within yehB at 5394.308 kb on + strand, within yehB at 5394.310 kb on + strand, within yehB at 5394.310 kb on + strand, within yehB at 5394.310 kb on + strand, within yehB at 5394.310 kb on + strand, within yehB at 5394.311 kb on - strand, within yehB at 5394.312 kb on + strand, within yehB at 5394.312 kb on + strand, within yehB at 5394.312 kb on + strand, within yehB at 5394.312 kb on + strand, within yehB at 5394.313 kb on - strand, within yehB at 5394.400 kb on - strand, within yehB at 5394.403 kb on + strand, within yehB at 5394.403 kb on + strand, within yehB at 5394.403 kb on + strand, within yehB at 5394.499 kb on + strand, within yehB at 5394.637 kb on + strand, within yehB at 5394.661 kb on - strand, within yehB at 5394.673 kb on - strand, within yehB at 5394.761 kb on + strand, within yehB at 5394.774 kb on + strand, within yehB at 5394.903 kb on + strand at 5394.948 kb on - strand at 5395.102 kb on - strand at 5396.023 kb on - strand at 5396.145 kb on - strand at 5396.154 kb on + strand at 5396.282 kb on - strand, within rcnB at 5396.283 kb on + strand, within rcnB at 5396.283 kb on + strand, within rcnB at 5396.284 kb on - strand, within rcnB at 5396.284 kb on - strand, within rcnB at 5396.339 kb on - strand, within rcnB at 5396.347 kb on - strand, within rcnB at 5396.361 kb on + strand, within rcnB at 5396.398 kb on + strand, within rcnB at 5396.427 kb on + strand, within rcnB at 5396.428 kb on - strand, within rcnB at 5396.492 kb on - strand, within rcnB at 5396.536 kb on + strand at 5396.561 kb on - strand at 5396.561 kb on - strand at 5396.593 kb on + strand at 5396.593 kb on + strand at 5396.594 kb on - strand at 5396.594 kb on - strand at 5396.595 kb on + strand at 5396.596 kb on - strand at 5396.618 kb on - strand at 5396.659 kb on + strand at 5396.659 kb on + strand at 5396.762 kb on + strand at 5396.792 kb on - strand at 5396.792 kb on - strand at 5396.853 kb on - strand, within rcnA at 5396.923 kb on - strand, within rcnA at 5397.005 kb on + strand, within rcnA at 5397.026 kb on + strand, within rcnA at 5397.027 kb on - strand, within rcnA at 5397.048 kb on + strand, within rcnA at 5397.095 kb on + strand, within rcnA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 5,394,106 - yehB JDDGAC_28140 0.61 -0.9 5,394,121 + yehB JDDGAC_28140 0.62 +0.6 5,394,164 - yehB JDDGAC_28140 0.63 +0.3 5,394,190 + yehB JDDGAC_28140 0.64 -0.3 5,394,190 + yehB JDDGAC_28140 0.64 +1.3 5,394,308 + yehB JDDGAC_28140 0.69 +0.1 5,394,308 + yehB JDDGAC_28140 0.69 +0.0 5,394,310 + yehB JDDGAC_28140 0.69 -0.7 5,394,310 + yehB JDDGAC_28140 0.69 -1.6 5,394,310 + yehB JDDGAC_28140 0.69 +1.6 5,394,310 + yehB JDDGAC_28140 0.69 -0.5 5,394,311 - yehB JDDGAC_28140 0.69 -3.8 5,394,312 + yehB JDDGAC_28140 0.69 -0.1 5,394,312 + yehB JDDGAC_28140 0.69 -1.4 5,394,312 + yehB JDDGAC_28140 0.69 -0.7 5,394,312 + yehB JDDGAC_28140 0.69 -0.4 5,394,313 - yehB JDDGAC_28140 0.69 +0.7 5,394,400 - yehB JDDGAC_28140 0.73 -0.4 5,394,403 + yehB JDDGAC_28140 0.73 -0.4 5,394,403 + yehB JDDGAC_28140 0.73 +0.3 5,394,403 + yehB JDDGAC_28140 0.73 -0.3 5,394,499 + yehB JDDGAC_28140 0.77 -0.0 5,394,637 + yehB JDDGAC_28140 0.82 -2.3 5,394,661 - yehB JDDGAC_28140 0.83 +0.7 5,394,673 - yehB JDDGAC_28140 0.84 +1.5 5,394,761 + yehB JDDGAC_28140 0.87 -2.2 5,394,774 + yehB JDDGAC_28140 0.88 +0.8 5,394,903 + +0.8 5,394,948 - -0.4 5,395,102 - -0.7 5,396,023 - -0.8 5,396,145 - -2.8 5,396,154 + +0.1 5,396,282 - rcnB JDDGAC_28150 0.25 +1.9 5,396,283 + rcnB JDDGAC_28150 0.25 -0.9 5,396,283 + rcnB JDDGAC_28150 0.25 +0.1 5,396,284 - rcnB JDDGAC_28150 0.25 +0.6 5,396,284 - rcnB JDDGAC_28150 0.25 -2.2 5,396,339 - rcnB JDDGAC_28150 0.42 -1.6 5,396,347 - rcnB JDDGAC_28150 0.44 -1.7 5,396,361 + rcnB JDDGAC_28150 0.48 -0.5 5,396,398 + rcnB JDDGAC_28150 0.59 +0.9 5,396,427 + rcnB JDDGAC_28150 0.68 +1.4 5,396,428 - rcnB JDDGAC_28150 0.68 -0.3 5,396,492 - rcnB JDDGAC_28150 0.87 -0.5 5,396,536 + -2.2 5,396,561 - -2.8 5,396,561 - +0.3 5,396,593 + -1.6 5,396,593 + -3.6 5,396,594 - +1.0 5,396,594 - +0.3 5,396,595 + +0.1 5,396,596 - +2.1 5,396,618 - +0.2 5,396,659 + +1.9 5,396,659 + +1.1 5,396,762 + +0.2 5,396,792 - +0.2 5,396,792 - -1.4 5,396,853 - rcnA JDDGAC_28155 0.12 +1.7 5,396,923 - rcnA JDDGAC_28155 0.20 +1.7 5,397,005 + rcnA JDDGAC_28155 0.29 -1.4 5,397,026 + rcnA JDDGAC_28155 0.32 +1.4 5,397,027 - rcnA JDDGAC_28155 0.32 +0.2 5,397,048 + rcnA JDDGAC_28155 0.35 +0.2 5,397,095 + rcnA JDDGAC_28155 0.40 +1.0
Or see this region's nucleotide sequence