Strain Fitness in Escherichia coli ECRC98 around JDDGAC_27925

Experiment: WM_Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_27915 and JDDGAC_27920 are separated by 13 nucleotidesJDDGAC_27920 and JDDGAC_27925 are separated by 26 nucleotidesJDDGAC_27925 and JDDGAC_27930 are separated by 43 nucleotides JDDGAC_27915: JDDGAC_27915 - phage tail protein, at 5,347,594 to 5,348,346 _27915 JDDGAC_27920: JDDGAC_27920 - phage minor tail protein G, at 5,348,360 to 5,348,782 _27920 JDDGAC_27925: JDDGAC_27925 - phage tail assembly protein T, at 5,348,809 to 5,349,117 _27925 JDDGAC_27930: JDDGAC_27930 - phage tail tape measure protein, at 5,349,161 to 5,351,806 _27930 Position (kb) 5348 5349 5350Strain fitness (log2 ratio) -2 -1 0 1at 5349.050 kb on + strand, within JDDGAC_27925at 5349.050 kb on + strand, within JDDGAC_27925at 5349.050 kb on + strand, within JDDGAC_27925at 5349.050 kb on + strand, within JDDGAC_27925at 5349.122 kb on + strandat 5349.122 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
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5,349,050 + JDDGAC_27925 0.78 -1.3
5,349,050 + JDDGAC_27925 0.78 -2.0
5,349,050 + JDDGAC_27925 0.78 +0.2
5,349,050 + JDDGAC_27925 0.78 +1.0
5,349,122 + +0.6
5,349,122 + +0.5

Or see this region's nucleotide sequence