Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yehY and yehX overlap by 8 nucleotides yehX and yehW are separated by 4 nucleotides yehW and yohO overlap by 20 nucleotides yohO and mlrA are separated by 59 nucleotides mlrA and fimB are separated by 74 nucleotides
JDDGAC_27620: yehY - glycine betaine ABC transporter permease YehY, at 5,313,413 to 5,314,570
yehY
JDDGAC_27625: yehX - glycine betaine ABC transporter ATP binding protein YehX, at 5,314,563 to 5,315,489
yehX
JDDGAC_27630: yehW - glycine betaine ABC transporter permease YehW, at 5,315,494 to 5,316,225
yehW
JDDGAC_27635: yohO - protein YohO, at 5,316,206 to 5,316,313
yohO
JDDGAC_27640: mlrA - HTH-type transcriptional regulator MlrA, at 5,316,373 to 5,317,020
mlrA
JDDGAC_27645: fimB - site-specific integrase, at 5,317,095 to 5,318,381
fimB
Position (kb) 5315
5316
5317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5314.495 kb on - strand at 5314.561 kb on + strand at 5314.562 kb on - strand at 5314.703 kb on + strand, within yehX at 5315.029 kb on + strand, within yehX at 5315.145 kb on - strand, within yehX at 5315.306 kb on + strand, within yehX at 5315.306 kb on + strand, within yehX at 5315.306 kb on + strand, within yehX at 5315.307 kb on - strand, within yehX at 5315.320 kb on - strand, within yehX at 5315.487 kb on + strand at 5315.615 kb on - strand, within yehW at 5315.760 kb on + strand, within yehW at 5315.760 kb on + strand, within yehW at 5315.974 kb on - strand, within yehW at 5315.984 kb on + strand, within yehW at 5316.034 kb on - strand, within yehW at 5316.229 kb on + strand, within yohO at 5316.229 kb on + strand, within yohO at 5316.229 kb on + strand, within yohO at 5316.229 kb on + strand, within yohO at 5316.229 kb on + strand, within yohO at 5316.302 kb on - strand, within yohO at 5316.305 kb on + strand at 5316.306 kb on - strand at 5316.325 kb on + strand at 5316.344 kb on + strand at 5316.345 kb on - strand at 5316.349 kb on + strand at 5316.487 kb on + strand, within mlrA at 5316.659 kb on + strand, within mlrA at 5316.659 kb on + strand, within mlrA at 5316.660 kb on - strand, within mlrA at 5316.670 kb on + strand, within mlrA at 5316.671 kb on - strand, within mlrA at 5316.717 kb on - strand, within mlrA at 5316.742 kb on - strand, within mlrA at 5316.906 kb on + strand, within mlrA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 5,314,495 - -1.1 5,314,561 + -1.4 5,314,562 - +1.2 5,314,703 + yehX JDDGAC_27625 0.15 +0.1 5,315,029 + yehX JDDGAC_27625 0.50 -1.0 5,315,145 - yehX JDDGAC_27625 0.63 +0.9 5,315,306 + yehX JDDGAC_27625 0.80 -0.5 5,315,306 + yehX JDDGAC_27625 0.80 +0.9 5,315,306 + yehX JDDGAC_27625 0.80 -0.8 5,315,307 - yehX JDDGAC_27625 0.80 +0.6 5,315,320 - yehX JDDGAC_27625 0.82 -0.8 5,315,487 + -1.5 5,315,615 - yehW JDDGAC_27630 0.17 -1.9 5,315,760 + yehW JDDGAC_27630 0.36 +1.2 5,315,760 + yehW JDDGAC_27630 0.36 +0.7 5,315,974 - yehW JDDGAC_27630 0.66 -0.1 5,315,984 + yehW JDDGAC_27630 0.67 +1.4 5,316,034 - yehW JDDGAC_27630 0.74 -3.3 5,316,229 + yohO JDDGAC_27635 0.21 +0.5 5,316,229 + yohO JDDGAC_27635 0.21 -1.6 5,316,229 + yohO JDDGAC_27635 0.21 -1.1 5,316,229 + yohO JDDGAC_27635 0.21 -3.0 5,316,229 + yohO JDDGAC_27635 0.21 -2.7 5,316,302 - yohO JDDGAC_27635 0.89 +1.1 5,316,305 + -1.0 5,316,306 - +1.7 5,316,325 + -0.3 5,316,344 + -0.1 5,316,345 - +1.2 5,316,349 + +0.0 5,316,487 + mlrA JDDGAC_27640 0.18 -1.6 5,316,659 + mlrA JDDGAC_27640 0.44 +1.8 5,316,659 + mlrA JDDGAC_27640 0.44 -2.7 5,316,660 - mlrA JDDGAC_27640 0.44 +0.3 5,316,670 + mlrA JDDGAC_27640 0.46 -2.8 5,316,671 - mlrA JDDGAC_27640 0.46 +1.3 5,316,717 - mlrA JDDGAC_27640 0.53 +1.5 5,316,742 - mlrA JDDGAC_27640 0.57 -1.2 5,316,906 + mlrA JDDGAC_27640 0.82 -0.0
Or see this region's nucleotide sequence