Strain Fitness in Escherichia coli ECRC98 around JDDGAC_20655

Experiment: WM_Bas09

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	WM_Bas09
3,965,106	-	feoB	JDDGAC_20645	0.86	+1.5
3,965,135	-	feoB	JDDGAC_20645	0.88	+1.1
3,965,185	-	feoB	JDDGAC_20645	0.90	-1.9
3,965,241	+				+0.8
3,965,242	-				+3.3
3,965,242	-				+0.5
3,965,303	-				-0.4
3,965,303	-				+1.0
3,965,329	+				-1.0
3,965,329	+				+1.0
3,965,329	+				-0.1
3,965,330	-				-0.4
3,965,330	-				+0.9
3,965,333	+				-2.1
3,965,333	+				-1.2
3,965,366	+				-0.3
3,965,367	-				+0.4
3,965,392	+				+1.2
3,965,393	-				-1.5
3,965,400	-				-0.5
3,965,400	-				-0.1
3,965,405	+				+0.2
3,965,406	-				-1.4
3,965,437	+				+0.3
3,965,438	-				+0.5
3,965,441	-				-0.7
3,965,441	-				+0.4
3,965,463	+	feoA	JDDGAC_20650	0.11	-1.6
3,965,464	-	feoA	JDDGAC_20650	0.11	+0.2
3,965,464	-	feoA	JDDGAC_20650	0.11	-2.1
3,965,572	-	feoA	JDDGAC_20650	0.58	+0.5
3,965,572	-	feoA	JDDGAC_20650	0.58	+0.4
3,965,572	-	feoA	JDDGAC_20650	0.58	+0.4
3,965,649	-				-1.5
3,965,659	+				+0.8
3,965,659	+				-2.6
3,965,659	+				-1.2
3,965,659	+				+0.4
3,965,660	-				-0.7
3,965,660	-				-1.5
3,965,666	+				+0.4
3,965,666	+				+1.2
3,965,666	+				+1.5
3,965,666	+				-0.9
3,965,666	+				-2.0
3,965,667	-				+1.6
3,965,667	-				-0.2
3,965,674	+				-0.9
3,965,674	+				+0.6
3,965,675	-				-3.2
3,965,675	-				+1.9
3,965,696	+				-0.4
3,965,697	-				-1.7
3,965,700	+				-1.8
3,965,701	-				+0.4
3,965,701	-				-0.9
3,965,701	-				+0.6
3,965,760	+				-0.5
3,965,760	+				-0.1
3,965,764	+				+0.3
3,965,764	+				+0.7
3,965,812	-				+1.1
3,965,841	+				+0.7
3,965,841	+				+0.4
3,965,873	+				+0.5
3,965,873	+				-0.0
3,965,874	-				-0.5
3,965,876	-				-1.5
3,965,889	+				-0.3
3,965,908	+				+2.3
3,965,928	+				+0.8
3,965,973	+				+1.1
3,965,973	+				+1.5
3,965,973	+				+1.3
3,965,973	+				+0.5
3,965,974	-				+0.5
3,965,974	-				-1.0
3,965,975	+				-0.3
3,966,028	+				+1.7
3,966,028	+				-1.1
3,966,028	+				-1.9
3,966,029	-				+0.5
3,966,283	+				-2.5
3,966,284	-				+1.0
3,966,349	+	yhgF	JDDGAC_20655	0.11	-0.2
3,966,472	+	yhgF	JDDGAC_20655	0.16	-0.5
3,966,472	+	yhgF	JDDGAC_20655	0.16	-1.3
3,966,526	+	yhgF	JDDGAC_20655	0.18	-0.1
3,966,581	+	yhgF	JDDGAC_20655	0.21	-0.4
3,966,582	-	yhgF	JDDGAC_20655	0.21	+0.4
3,966,728	-	yhgF	JDDGAC_20655	0.27	+0.2
3,966,728	-	yhgF	JDDGAC_20655	0.27	-0.1
3,966,908	+	yhgF	JDDGAC_20655	0.35	+1.5
3,966,912	-	yhgF	JDDGAC_20655	0.35	-0.3
3,966,954	-	yhgF	JDDGAC_20655	0.37	-3.3
3,966,965	+	yhgF	JDDGAC_20655	0.37	-2.3
3,966,966	-	yhgF	JDDGAC_20655	0.37	+1.3
3,966,968	+	yhgF	JDDGAC_20655	0.37	-1.2
3,966,969	-	yhgF	JDDGAC_20655	0.37	-2.4
3,967,025	+	yhgF	JDDGAC_20655	0.40	-0.5
3,967,026	-	yhgF	JDDGAC_20655	0.40	+1.1
3,967,158	+	yhgF	JDDGAC_20655	0.45	+0.3
3,967,261	+	yhgF	JDDGAC_20655	0.50	-1.0
3,967,291	+	yhgF	JDDGAC_20655	0.51	-2.5
3,967,353	+	yhgF	JDDGAC_20655	0.54	+0.0
3,967,353	+	yhgF	JDDGAC_20655	0.54	-0.4
3,967,669	-	yhgF	JDDGAC_20655	0.67	+0.4
3,967,724	+	yhgF	JDDGAC_20655	0.70	-0.9
3,967,725	-	yhgF	JDDGAC_20655	0.70	+0.8
3,967,736	-	yhgF	JDDGAC_20655	0.70	+1.6
3,967,878	+	yhgF	JDDGAC_20655	0.76	-0.8
3,967,879	-	yhgF	JDDGAC_20655	0.76	+0.6
3,967,879	-	yhgF	JDDGAC_20655	0.76	+0.1
3,967,933	+	yhgF	JDDGAC_20655	0.79	-1.2
3,967,990	+	yhgF	JDDGAC_20655	0.81	+0.9
3,967,990	+	yhgF	JDDGAC_20655	0.81	+0.2
3,967,990	+	yhgF	JDDGAC_20655	0.81	+0.0
3,967,990	+	yhgF	JDDGAC_20655	0.81	+0.4
3,967,991	-	yhgF	JDDGAC_20655	0.81	+0.0
3,968,116	-	yhgF	JDDGAC_20655	0.87	+0.7
3,968,242	-				+1.7
3,968,263	+				+0.6
3,968,263	+				-2.6
3,968,308	-				-2.0
3,968,329	+				+0.0
3,968,329	+				+1.2
3,968,329	+				+0.9
3,968,464	-				+0.1
3,968,467	+				+1.1
3,968,467	+				+0.4
3,968,468	-				-0.4
3,968,511	-				-1.4
3,968,548	+				+1.2
3,968,549	-				-3.7
3,968,553	+				+0.0
3,968,553	+				+0.5
3,968,553	+				+1.8
3,968,554	-				+0.5
3,968,554	-				-0.3
3,968,554	-				-1.9
3,968,649	+	greB	JDDGAC_20660	0.27	+0.8
3,968,649	+	greB	JDDGAC_20660	0.27	-2.0
3,968,650	-	greB	JDDGAC_20660	0.27	+1.3
3,968,650	-	greB	JDDGAC_20660	0.27	+0.5
3,968,650	-	greB	JDDGAC_20660	0.27	+1.5
3,968,650	-	greB	JDDGAC_20660	0.27	-0.4
3,968,800	+	greB	JDDGAC_20660	0.58	-0.6
3,968,809	-	greB	JDDGAC_20660	0.60	+0.0
3,968,809	-	greB	JDDGAC_20660	0.60	-0.9
3,968,849	-	greB	JDDGAC_20660	0.69	-0.7
3,968,849	-	greB	JDDGAC_20660	0.69	+0.8
3,968,849	-	greB	JDDGAC_20660	0.69	-0.8
3,968,849	-	greB	JDDGAC_20660	0.69	-1.8
3,968,851	-	greB	JDDGAC_20660	0.69	-0.6
3,968,851	-	greB	JDDGAC_20660	0.69	+0.9
3,968,941	-	greB	JDDGAC_20660	0.88	-0.6
3,968,941	-	greB	JDDGAC_20660	0.88	+0.7
3,968,944	+	greB	JDDGAC_20660	0.88	-3.3
3,968,945	-	greB	JDDGAC_20660	0.89	-2.8
3,969,041	+				-3.0
3,969,042	-				+0.8
3,969,043	+				-1.4
3,969,044	-				+0.2
3,969,054	+				+0.4
3,969,054	+				+0.2
3,969,055	-				-0.7
3,969,055	-				+1.1
3,969,091	+				-1.1
3,969,093	+				+0.1
3,969,097	+				-0.3
3,969,098	-				+0.4
3,969,098	-				+1.2
3,969,129	+				+1.4
3,969,185	-				+1.3
3,969,185	-				+2.4
3,969,192	+				-0.0
3,969,192	+				+0.2
3,969,193	-				+1.2
3,969,218	+				+1.1
3,969,219	-				+1.1
3,969,239	-				-0.1
3,969,379	-	ompR_G63V	JDDGAC_20665	0.21	-1.9
3,969,392	+	ompR_G63V	JDDGAC_20665	0.23	+1.2
3,969,393	-	ompR_G63V	JDDGAC_20665	0.23	-1.5
3,969,398	+	ompR_G63V	JDDGAC_20665	0.24	+0.6