Strain Fitness in Escherichia coli ECRC98 around JDDGAC_16620

Experiment: WM_Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_16615 and lomR are separated by 64 nucleotideslomR and JDDGAC_16625 are separated by 67 nucleotidesJDDGAC_16625 and JDDGAC_16630 are separated by 86 nucleotides JDDGAC_16615: JDDGAC_16615 - phage tail protein, at 3,135,086 to 3,136,399 _16615 JDDGAC_16620: lomR - Ail/Lom family protein, at 3,136,464 to 3,137,063 lomR JDDGAC_16625: JDDGAC_16625 - phage tail protein, at 3,137,131 to 3,137,784 _16625 JDDGAC_16630: JDDGAC_16630 - CPS-53 (KpLE1) prophage protein, at 3,137,871 to 3,138,257 _16630 Position (kb) 3136 3137 3138Strain fitness (log2 ratio) -1 0 1 2at 3137.190 kb on + strandat 3137.190 kb on + strandat 3137.376 kb on + strand, within JDDGAC_16625at 3137.656 kb on - strand, within JDDGAC_16625at 3137.865 kb on + strandat 3137.866 kb on - strandat 3137.866 kb on - strandat 3137.886 kb on - strandat 3137.930 kb on + strand, within JDDGAC_16630at 3138.032 kb on + strand, within JDDGAC_16630at 3138.033 kb on - strand, within JDDGAC_16630

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
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3,137,190 + -0.6
3,137,190 + -0.9
3,137,376 + JDDGAC_16625 0.37 +0.9
3,137,656 - JDDGAC_16625 0.80 -0.8
3,137,865 + +0.5
3,137,866 - -1.7
3,137,866 - +2.0
3,137,886 - -0.2
3,137,930 + JDDGAC_16630 0.15 +0.7
3,138,032 + JDDGAC_16630 0.42 -0.1
3,138,033 - JDDGAC_16630 0.42 -1.4

Or see this region's nucleotide sequence