Strain Fitness in Escherichia coli ECRC98 around JDDGAC_13555

Experiment: WM_Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_13550 and Asp_trna are separated by 328 nucleotidesAsp_trna and dnaQ are separated by 132 nucleotidesdnaQ and rnhA are separated by 55 nucleotides JDDGAC_13550: JDDGAC_13550 - Uncharacterized lipoprotein YafT, at 2,504,295 to 2,505,095 _13550 JDDGAC_13555: Asp_trna - tRNA-Asp(gtc), at 2,505,424 to 2,505,500 _trna JDDGAC_13560: dnaQ - DNA polymerase III subunit epsilon, at 2,505,633 to 2,506,373 dnaQ JDDGAC_13565: rnhA - ribonuclease HI, at 2,506,429 to 2,506,896 rnhA Position (kb) 2505 2506Strain fitness (log2 ratio) -1 0 1at 2504.525 kb on + strand, within JDDGAC_13550at 2504.526 kb on - strand, within JDDGAC_13550at 2504.552 kb on - strand, within JDDGAC_13550at 2504.678 kb on + strand, within JDDGAC_13550at 2504.780 kb on + strand, within JDDGAC_13550at 2504.845 kb on - strand, within JDDGAC_13550at 2505.070 kb on - strandat 2505.625 kb on - strandat 2505.625 kb on - strandat 2505.625 kb on - strandat 2505.630 kb on + strandat 2505.631 kb on - strandat 2505.631 kb on - strandat 2505.631 kb on - strandat 2505.634 kb on + strandat 2506.365 kb on - strandat 2506.376 kb on - strandat 2506.395 kb on - strandat 2506.411 kb on - strandat 2506.435 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
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2,504,525 + JDDGAC_13550 0.29 +1.3
2,504,526 - JDDGAC_13550 0.29 +0.8
2,504,552 - JDDGAC_13550 0.32 +1.3
2,504,678 + JDDGAC_13550 0.48 -1.4
2,504,780 + JDDGAC_13550 0.61 +0.9
2,504,845 - JDDGAC_13550 0.69 +1.7
2,505,070 - +0.9
2,505,625 - +0.2
2,505,625 - -1.6
2,505,625 - +1.1
2,505,630 + +1.5
2,505,631 - -0.2
2,505,631 - +1.3
2,505,631 - -1.7
2,505,634 + -1.7
2,506,365 - +1.0
2,506,376 - -1.2
2,506,395 - +1.3
2,506,411 - +0.5
2,506,435 - +0.7

Or see this region's nucleotide sequence