Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_07550 and JDDGAC_07555 are separated by 293 nucleotides JDDGAC_07555 and JDDGAC_07560 overlap by 4 nucleotides JDDGAC_07560 and JDDGAC_07565 are separated by 46 nucleotides JDDGAC_07565 and JDDGAC_07570 are separated by 49 nucleotides JDDGAC_07570 and JDDGAC_07575 overlap by 1 nucleotides
JDDGAC_07550: JDDGAC_07550 - restriction endonuclease subunit M, at 1,308,366 to 1,309,208
_07550
JDDGAC_07555: JDDGAC_07555 - DUF5983 domain-containing protein, at 1,309,502 to 1,309,993
_07555
JDDGAC_07560: JDDGAC_07560 - toxin, at 1,309,990 to 1,310,364
_07560
JDDGAC_07565: JDDGAC_07565 - antitoxin, at 1,310,411 to 1,310,785
_07565
JDDGAC_07570: JDDGAC_07570 - Phage-related protein, at 1,310,835 to 1,310,948
_07570
JDDGAC_07575: JDDGAC_07575 - DUF987 domain-containing protein, at 1,310,948 to 1,311,169
_07575
Position (kb) 1309
1310 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1308.866 kb on + strand, within JDDGAC_07550 at 1309.037 kb on + strand, within JDDGAC_07550 at 1309.037 kb on + strand, within JDDGAC_07550 at 1309.110 kb on - strand, within JDDGAC_07550 at 1309.110 kb on - strand, within JDDGAC_07550 at 1309.110 kb on - strand, within JDDGAC_07550 at 1309.389 kb on - strand at 1309.907 kb on - strand, within JDDGAC_07555 at 1310.091 kb on + strand, within JDDGAC_07560 at 1310.091 kb on + strand, within JDDGAC_07560 at 1310.091 kb on + strand, within JDDGAC_07560 at 1310.098 kb on + strand, within JDDGAC_07560 at 1310.102 kb on - strand, within JDDGAC_07560 at 1310.264 kb on + strand, within JDDGAC_07560 at 1310.338 kb on + strand at 1310.339 kb on - strand at 1310.339 kb on - strand at 1310.367 kb on + strand at 1310.367 kb on + strand at 1310.368 kb on - strand at 1310.378 kb on + strand at 1310.391 kb on + strand at 1310.392 kb on - strand at 1310.413 kb on - strand at 1310.454 kb on + strand, within JDDGAC_07565 at 1310.460 kb on + strand, within JDDGAC_07565 at 1310.521 kb on + strand, within JDDGAC_07565 at 1310.521 kb on + strand, within JDDGAC_07565 at 1310.607 kb on + strand, within JDDGAC_07565 at 1310.658 kb on + strand, within JDDGAC_07565 at 1310.763 kb on - strand at 1310.812 kb on - strand at 1310.870 kb on - strand, within JDDGAC_07570 at 1310.870 kb on - strand, within JDDGAC_07570 at 1310.979 kb on + strand, within JDDGAC_07575
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 1,308,866 + JDDGAC_07550 0.59 +0.0 1,309,037 + JDDGAC_07550 0.80 -0.9 1,309,037 + JDDGAC_07550 0.80 -0.1 1,309,110 - JDDGAC_07550 0.88 -0.1 1,309,110 - JDDGAC_07550 0.88 +0.3 1,309,110 - JDDGAC_07550 0.88 +0.6 1,309,389 - +1.5 1,309,907 - JDDGAC_07555 0.82 +0.9 1,310,091 + JDDGAC_07560 0.27 -2.1 1,310,091 + JDDGAC_07560 0.27 -0.2 1,310,091 + JDDGAC_07560 0.27 -0.0 1,310,098 + JDDGAC_07560 0.29 +0.7 1,310,102 - JDDGAC_07560 0.30 -0.3 1,310,264 + JDDGAC_07560 0.73 -0.0 1,310,338 + -0.1 1,310,339 - +0.3 1,310,339 - -1.7 1,310,367 + -1.5 1,310,367 + +0.0 1,310,368 - +0.6 1,310,378 + -2.1 1,310,391 + -0.4 1,310,392 - -0.6 1,310,413 - -1.1 1,310,454 + JDDGAC_07565 0.11 +2.0 1,310,460 + JDDGAC_07565 0.13 -2.2 1,310,521 + JDDGAC_07565 0.29 +0.7 1,310,521 + JDDGAC_07565 0.29 +0.6 1,310,607 + JDDGAC_07565 0.52 +1.0 1,310,658 + JDDGAC_07565 0.66 -3.3 1,310,763 - -0.6 1,310,812 - +0.7 1,310,870 - JDDGAC_07570 0.31 +0.4 1,310,870 - JDDGAC_07570 0.31 -1.1 1,310,979 + JDDGAC_07575 0.14 -2.3
Or see this region's nucleotide sequence