Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03700

Experiment: WM_Bas09

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_03695 and JDDGAC_03700 are separated by 157 nucleotidesJDDGAC_03700 and fimA are separated by 973 nucleotides JDDGAC_03695: JDDGAC_03695 - Autotransporter domain-containing protein, at 621,215 to 622,615 _03695 JDDGAC_03700: JDDGAC_03700 - Protein HipA, at 622,773 to 623,795 _03700 JDDGAC_03705: fimA - type 1 fimbrial major subunit FimA, at 624,769 to 625,332 fimA Position (kb) 622 623 624Strain fitness (log2 ratio) -2 -1 0 1 2at 621.846 kb on + strand, within JDDGAC_03695at 622.049 kb on + strand, within JDDGAC_03695at 622.072 kb on + strand, within JDDGAC_03695at 622.183 kb on + strand, within JDDGAC_03695at 622.183 kb on + strand, within JDDGAC_03695at 622.420 kb on + strand, within JDDGAC_03695at 622.420 kb on + strand, within JDDGAC_03695at 622.491 kb on + strandat 622.491 kb on + strandat 622.491 kb on + strandat 622.571 kb on + strandat 622.604 kb on + strandat 622.604 kb on + strandat 622.622 kb on + strandat 622.622 kb on + strandat 622.781 kb on - strandat 623.085 kb on + strand, within JDDGAC_03700at 623.507 kb on - strand, within JDDGAC_03700at 624.397 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
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621,846 + JDDGAC_03695 0.45 +0.4
622,049 + JDDGAC_03695 0.60 +1.0
622,072 + JDDGAC_03695 0.61 -0.9
622,183 + JDDGAC_03695 0.69 +0.2
622,183 + JDDGAC_03695 0.69 +1.4
622,420 + JDDGAC_03695 0.86 +0.2
622,420 + JDDGAC_03695 0.86 +0.0
622,491 + +0.9
622,491 + -0.8
622,491 + -0.1
622,571 + -0.7
622,604 + -0.6
622,604 + +0.4
622,622 + -2.6
622,622 + +0.5
622,781 - -1.2
623,085 + JDDGAC_03700 0.30 +2.1
623,507 - JDDGAC_03700 0.72 -1.2
624,397 + -0.6

Or see this region's nucleotide sequence