Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_02485 and JDDGAC_02490 are separated by 56 nucleotides JDDGAC_02490 and JDDGAC_02495 are separated by 115 nucleotides JDDGAC_02495 and JDDGAC_02500 overlap by 12 nucleotides JDDGAC_02500 and JDDGAC_02510 are separated by 44 nucleotides JDDGAC_02510 and JDDGAC_02515 are separated by 447 nucleotides
JDDGAC_02485: JDDGAC_02485 - DUF977 domain-containing protein, at 445,396 to 445,791
_02485
JDDGAC_02490: JDDGAC_02490 - DUF551 domain-containing protein, at 445,848 to 446,432
_02490
JDDGAC_02495: JDDGAC_02495 - hypothetical protein, at 446,548 to 446,652
_02495
JDDGAC_02500: JDDGAC_02500 - hypothetical protein, at 446,641 to 446,796
_02500
JDDGAC_02510: JDDGAC_02510 - protein hokC, at 446,841 to 447,053
_02510
JDDGAC_02515: JDDGAC_02515 - DUF968 domain-containing protein, at 447,501 to 448,550
_02515
Position (kb) 446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 445.564 kb on + strand, within JDDGAC_02485 at 445.564 kb on + strand, within JDDGAC_02485 at 445.575 kb on + strand, within JDDGAC_02485 at 445.760 kb on - strand at 445.897 kb on + strand at 445.898 kb on - strand at 445.966 kb on + strand, within JDDGAC_02490 at 446.016 kb on + strand, within JDDGAC_02490 at 446.018 kb on + strand, within JDDGAC_02490 at 446.088 kb on + strand, within JDDGAC_02490 at 446.088 kb on + strand, within JDDGAC_02490 at 446.088 kb on + strand, within JDDGAC_02490 at 446.098 kb on + strand, within JDDGAC_02490 at 446.099 kb on - strand, within JDDGAC_02490 at 446.099 kb on - strand, within JDDGAC_02490 at 446.101 kb on - strand, within JDDGAC_02490 at 446.954 kb on - strand, within JDDGAC_02510 at 446.954 kb on - strand, within JDDGAC_02510
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 445,564 + JDDGAC_02485 0.42 -0.1 445,564 + JDDGAC_02485 0.42 +0.1 445,575 + JDDGAC_02485 0.45 +0.7 445,760 - -2.6 445,897 + -1.4 445,898 - -0.1 445,966 + JDDGAC_02490 0.20 -2.4 446,016 + JDDGAC_02490 0.29 -3.4 446,018 + JDDGAC_02490 0.29 +0.6 446,088 + JDDGAC_02490 0.41 -0.9 446,088 + JDDGAC_02490 0.41 -0.8 446,088 + JDDGAC_02490 0.41 -0.7 446,098 + JDDGAC_02490 0.43 -0.5 446,099 - JDDGAC_02490 0.43 +2.1 446,099 - JDDGAC_02490 0.43 -0.1 446,101 - JDDGAC_02490 0.43 -0.6 446,954 - JDDGAC_02510 0.53 +1.5 446,954 - JDDGAC_02510 0.53 -2.4
Or see this region's nucleotide sequence