Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhJ and ydhI are separated by 2 nucleotides ydhI and slyA are separated by 200 nucleotides slyA and slyB are separated by 46 nucleotides slyB and anmK are separated by 272 nucleotides
JDDGAC_02055: ydhJ - Uncharacterized protein YdhJ, at 368,706 to 369,563
ydhJ
JDDGAC_02060: ydhI - Uncharacterized protein YdhI, at 369,566 to 369,802
ydhI
JDDGAC_02065: slyA - transcriptional regulator SlyA, at 370,003 to 370,437
slyA
JDDGAC_02070: slyB - outer membrane lipoprotein SlyB, at 370,484 to 370,951
slyB
JDDGAC_02075: anmK - anhydro-N-acetylmuramic acid kinase, at 371,224 to 372,333
anmK
Position (kb) 370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 369.567 kb on + strand at 369.767 kb on + strand, within ydhI at 369.768 kb on - strand, within ydhI at 369.829 kb on + strand at 369.856 kb on + strand at 369.891 kb on + strand at 369.936 kb on + strand at 369.952 kb on + strand at 369.990 kb on + strand at 370.016 kb on + strand at 370.108 kb on - strand, within slyA at 370.321 kb on - strand, within slyA at 370.482 kb on - strand at 370.527 kb on - strand at 370.724 kb on - strand, within slyB at 370.842 kb on - strand, within slyB at 370.892 kb on - strand, within slyB at 370.946 kb on - strand at 371.008 kb on - strand at 371.008 kb on - strand at 371.017 kb on - strand at 371.049 kb on - strand at 371.373 kb on + strand, within anmK at 371.395 kb on - strand, within anmK at 371.493 kb on + strand, within anmK at 371.493 kb on + strand, within anmK at 371.494 kb on - strand, within anmK at 371.604 kb on + strand, within anmK at 371.605 kb on - strand, within anmK at 371.666 kb on + strand, within anmK at 371.780 kb on - strand, within anmK at 371.796 kb on + strand, within anmK at 371.843 kb on - strand, within anmK
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 369,567 + +0.5 369,767 + ydhI JDDGAC_02060 0.85 +0.7 369,768 - ydhI JDDGAC_02060 0.85 -2.4 369,829 + -0.5 369,856 + +0.0 369,891 + -0.4 369,936 + +0.5 369,952 + -0.4 369,990 + -0.0 370,016 + -1.0 370,108 - slyA JDDGAC_02065 0.24 -0.1 370,321 - slyA JDDGAC_02065 0.73 +0.1 370,482 - +0.3 370,527 - -0.5 370,724 - slyB JDDGAC_02070 0.51 -1.7 370,842 - slyB JDDGAC_02070 0.76 +2.3 370,892 - slyB JDDGAC_02070 0.87 -1.5 370,946 - +0.2 371,008 - +2.3 371,008 - +2.0 371,017 - -0.5 371,049 - -1.5 371,373 + anmK JDDGAC_02075 0.13 -0.1 371,395 - anmK JDDGAC_02075 0.15 -1.0 371,493 + anmK JDDGAC_02075 0.24 -0.5 371,493 + anmK JDDGAC_02075 0.24 +0.4 371,494 - anmK JDDGAC_02075 0.24 -0.0 371,604 + anmK JDDGAC_02075 0.34 -0.0 371,605 - anmK JDDGAC_02075 0.34 +0.7 371,666 + anmK JDDGAC_02075 0.40 +1.0 371,780 - anmK JDDGAC_02075 0.50 -2.2 371,796 + anmK JDDGAC_02075 0.52 +0.1 371,843 - anmK JDDGAC_02075 0.56 -2.9
Or see this region's nucleotide sequence