Experiment: WM_Bas09
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldtE and lpp are separated by 62 nucleotides lpp and pykF are separated by 310 nucleotides pykF and fumD are separated by 556 nucleotides
JDDGAC_01855: ldtE - L,D-transpeptidase LdtE, at 330,804 to 331,808
ldtE
JDDGAC_01860: lpp - murein lipoprotein Lpp, at 331,871 to 332,107
lpp
JDDGAC_01865: pykF - pyruvate kinase PykF, at 332,418 to 333,830
pykF
JDDGAC_01870: fumD - fumarate hydratase FumD, at 334,387 to 334,596
fumD
Position (kb) 332
333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 331.643 kb on + strand, within ldtE at 331.651 kb on + strand, within ldtE at 331.750 kb on + strand at 331.787 kb on + strand at 331.788 kb on - strand at 331.817 kb on - strand at 331.867 kb on - strand at 331.882 kb on - strand at 331.886 kb on - strand at 331.991 kb on - strand, within lpp at 332.063 kb on - strand, within lpp at 332.063 kb on - strand, within lpp at 332.096 kb on - strand at 332.132 kb on - strand at 332.143 kb on - strand at 332.149 kb on - strand at 332.205 kb on + strand at 332.297 kb on - strand at 333.503 kb on - strand, within pykF at 333.847 kb on - strand at 333.934 kb on - strand at 334.157 kb on + strand at 334.234 kb on + strand at 334.234 kb on + strand at 334.257 kb on + strand at 334.262 kb on - strand at 334.349 kb on + strand at 334.371 kb on + strand at 334.489 kb on - strand, within fumD at 334.508 kb on + strand, within fumD at 334.700 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_Bas09 remove 331,643 + ldtE JDDGAC_01855 0.83 -3.5 331,651 + ldtE JDDGAC_01855 0.84 -0.0 331,750 + +2.1 331,787 + +0.6 331,788 - -0.4 331,817 - +0.8 331,867 - +0.9 331,882 - +0.7 331,886 - +0.1 331,991 - lpp JDDGAC_01860 0.51 +1.0 332,063 - lpp JDDGAC_01860 0.81 -2.4 332,063 - lpp JDDGAC_01860 0.81 -0.6 332,096 - +2.3 332,132 - +0.3 332,143 - +0.4 332,149 - -0.6 332,205 + -0.5 332,297 - +1.3 333,503 - pykF JDDGAC_01865 0.77 -0.1 333,847 - +1.2 333,934 - -0.3 334,157 + -1.0 334,234 + +1.2 334,234 + +1.8 334,257 + -1.6 334,262 - -1.9 334,349 + -2.1 334,371 + -0.1 334,489 - fumD JDDGAC_01870 0.49 +1.2 334,508 + fumD JDDGAC_01870 0.58 -3.0 334,700 - +2.0
Or see this region's nucleotide sequence