Strain Fitness in Escherichia coli ECRC98 around JDDGAC_00435

Experiment: WM_Bas09

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntuvrC and pgsA are separated by 56 nucleotidespgsA and Gly_trna are separated by 151 nucleotidesGly_trna and Cys_trna are separated by 53 nucleotidesCys_trna and Leu_trna are separated by 12 nucleotides JDDGAC_00415: uvrC - excinuclease ABC subunit UvrC, at 72,259 to 74,091 uvrC JDDGAC_00420: pgsA - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 74,148 to 74,696 pgsA JDDGAC_00425: Gly_trna - tRNA-Gly(gcc), at 74,848 to 74,923 _trna JDDGAC_00430: Cys_trna - tRNA-Cys(gca), at 74,977 to 75,050 _trna JDDGAC_00435: Leu_trna - tRNA-Leu(taa), at 75,063 to 75,149 _trna Position (kb) 75 76Strain fitness (log2 ratio) -2 -1 0 1at 75.180 kb on - strandat 75.218 kb on + strandat 75.497 kb on - strandat 75.550 kb on - strandat 75.560 kb on + strandat 75.602 kb on - strandat 75.618 kb on - strandat 75.624 kb on - strandat 75.671 kb on + strandat 75.832 kb on + strandat 75.855 kb on + strandat 75.905 kb on + strandat 76.001 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_Bas09
remove
75,180 - +0.1
75,218 + -0.1
75,497 - -0.8
75,550 - -0.1
75,560 + -1.7
75,602 - +1.0
75,618 - -0.1
75,624 - -0.5
75,671 + -2.0
75,832 + -1.4
75,855 + -0.2
75,905 + +0.8
76,001 - -2.5

Or see this region's nucleotide sequence