Experiment: R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS18960 and ABZR88_RS18965 are separated by 337 nucleotides ABZR88_RS18965 and ABZR88_RS18970 are separated by 192 nucleotides ABZR88_RS18970 and ABZR88_RS18975 are separated by 78 nucleotides
ABZR88_RS18960: ABZR88_RS18960 - threonine synthase, at 4,633,004 to 4,634,311
_RS18960
ABZR88_RS18965: ABZR88_RS18965 - DUF4407 domain-containing protein, at 4,634,649 to 4,635,767
_RS18965
ABZR88_RS18970: ABZR88_RS18970 - hypothetical protein, at 4,635,960 to 4,636,151
_RS18970
ABZR88_RS18975: ABZR88_RS18975 - glucose-1-phosphate adenylyltransferase, at 4,636,230 to 4,637,492
_RS18975
Position (kb) 4634
4635
4636 Strain fitness (log2 ratio) -1
0
1
2 at 4634.336 kb on + strand at 4634.427 kb on + strand at 4634.561 kb on - strand at 4634.597 kb on + strand at 4634.604 kb on - strand at 4634.624 kb on + strand at 4634.654 kb on + strand at 4634.802 kb on + strand, within ABZR88_RS18965 at 4634.879 kb on + strand, within ABZR88_RS18965 at 4634.893 kb on - strand, within ABZR88_RS18965 at 4635.255 kb on + strand, within ABZR88_RS18965 at 4635.466 kb on - strand, within ABZR88_RS18965 at 4635.495 kb on - strand, within ABZR88_RS18965 at 4635.498 kb on + strand, within ABZR88_RS18965 at 4635.738 kb on + strand at 4635.755 kb on + strand at 4635.756 kb on - strand at 4635.756 kb on - strand at 4636.090 kb on + strand, within ABZR88_RS18970 at 4636.090 kb on + strand, within ABZR88_RS18970 at 4636.176 kb on - strand at 4636.223 kb on + strand at 4636.279 kb on - strand at 4636.551 kb on - strand, within ABZR88_RS18975 at 4636.569 kb on - strand, within ABZR88_RS18975 at 4636.569 kb on - strand, within ABZR88_RS18975
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM remove 4,634,336 + +0.4 4,634,427 + +0.1 4,634,561 - -0.6 4,634,597 + -0.1 4,634,604 - +0.1 4,634,624 + -0.6 4,634,654 + -1.1 4,634,802 + ABZR88_RS18965 0.14 +0.3 4,634,879 + ABZR88_RS18965 0.21 +2.3 4,634,893 - ABZR88_RS18965 0.22 -0.2 4,635,255 + ABZR88_RS18965 0.54 -0.0 4,635,466 - ABZR88_RS18965 0.73 +1.1 4,635,495 - ABZR88_RS18965 0.76 -0.1 4,635,498 + ABZR88_RS18965 0.76 +0.7 4,635,738 + +0.0 4,635,755 + +0.4 4,635,756 - +1.2 4,635,756 - +1.9 4,636,090 + ABZR88_RS18970 0.68 -0.0 4,636,090 + ABZR88_RS18970 0.68 +1.0 4,636,176 - -0.0 4,636,223 + +0.1 4,636,279 - +0.5 4,636,551 - ABZR88_RS18975 0.25 -0.3 4,636,569 - ABZR88_RS18975 0.27 +0.0 4,636,569 - ABZR88_RS18975 0.27 +0.2
Or see this region's nucleotide sequence