Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS07750

Experiment: R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS07745 and ABZR88_RS07750 are separated by 305 nucleotidesABZR88_RS07750 and ABZR88_RS07755 are separated by 86 nucleotides ABZR88_RS07745: ABZR88_RS07745 - DNA polymerase IV, at 1,933,364 to 1,934,551 _RS07745 ABZR88_RS07750: ABZR88_RS07750 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,934,857 to 1,936,164 _RS07750 ABZR88_RS07755: ABZR88_RS07755 - DUF4290 domain-containing protein, at 1,936,251 to 1,936,976 _RS07755 Position (kb) 1934 1935 1936 1937Strain fitness (log2 ratio) -1 0 1at 1934.228 kb on - strand, within ABZR88_RS07745at 1936.255 kb on + strandat 1936.277 kb on + strandat 1936.277 kb on + strandat 1936.322 kb on + strandat 1936.568 kb on + strand, within ABZR88_RS07755at 1936.569 kb on - strand, within ABZR88_RS07755at 1936.616 kb on + strand, within ABZR88_RS07755at 1936.676 kb on + strand, within ABZR88_RS07755at 1936.860 kb on - strand, within ABZR88_RS07755at 1936.877 kb on - strand, within ABZR88_RS07755at 1936.881 kb on + strand, within ABZR88_RS07755at 1936.934 kb on + strandat 1937.033 kb on + strandat 1937.034 kb on - strandat 1937.034 kb on - strandat 1937.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
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1,934,228 - ABZR88_RS07745 0.73 -0.3
1,936,255 + -0.5
1,936,277 + -0.1
1,936,277 + +1.0
1,936,322 + -0.2
1,936,568 + ABZR88_RS07755 0.44 +0.4
1,936,569 - ABZR88_RS07755 0.44 -1.1
1,936,616 + ABZR88_RS07755 0.50 -0.5
1,936,676 + ABZR88_RS07755 0.59 +0.3
1,936,860 - ABZR88_RS07755 0.84 -1.7
1,936,877 - ABZR88_RS07755 0.86 -0.5
1,936,881 + ABZR88_RS07755 0.87 +0.1
1,936,934 + +0.9
1,937,033 + -0.3
1,937,034 - -0.1
1,937,034 - -0.5
1,937,106 - -0.1

Or see this region's nucleotide sequence