Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS01885

Experiment: R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR88_RS01880 and ABZR88_RS01885 are separated by 71 nucleotidesABZR88_RS01885 and ABZR88_RS01890 are separated by 758 nucleotides ABZR88_RS01880: ABZR88_RS01880 - 3-dehydro-L-gulonate 2-dehydrogenase, at 427,094 to 428,080 _RS01880 ABZR88_RS01885: ABZR88_RS01885 - methionine-R-sulfoxide reductase, at 428,152 to 428,517 _RS01885 ABZR88_RS01890: ABZR88_RS01890 - ribonucleoside-diphosphate reductase small subunit, at 429,276 to 430,250 _RS01890 Position (kb) 428 429Strain fitness (log2 ratio) -1 0 1 2at 427.156 kb on + strandat 427.515 kb on + strand, within ABZR88_RS01880at 427.572 kb on + strand, within ABZR88_RS01880at 427.573 kb on - strand, within ABZR88_RS01880at 427.652 kb on + strand, within ABZR88_RS01880at 427.715 kb on - strand, within ABZR88_RS01880at 427.787 kb on - strand, within ABZR88_RS01880at 427.946 kb on - strand, within ABZR88_RS01880at 428.050 kb on - strandat 428.109 kb on - strandat 428.397 kb on - strand, within ABZR88_RS01885at 428.564 kb on - strandat 428.740 kb on + strandat 428.808 kb on + strandat 428.928 kb on + strandat 429.013 kb on - strandat 429.104 kb on + strandat 429.115 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
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427,156 + -0.2
427,515 + ABZR88_RS01880 0.43 -0.6
427,572 + ABZR88_RS01880 0.48 -1.1
427,573 - ABZR88_RS01880 0.49 +0.0
427,652 + ABZR88_RS01880 0.57 -0.9
427,715 - ABZR88_RS01880 0.63 -0.6
427,787 - ABZR88_RS01880 0.70 -0.8
427,946 - ABZR88_RS01880 0.86 +0.1
428,050 - +1.8
428,109 - +1.0
428,397 - ABZR88_RS01885 0.67 -0.9
428,564 - +0.4
428,740 + -0.3
428,808 + -0.4
428,928 + -0.3
429,013 - +1.3
429,104 + +0.3
429,115 + -0.1

Or see this region's nucleotide sequence