Strain Fitness in Mucilaginibacter yixingensis YX-36 DSM 26809 around ABZR88_RS12425

Experiment: R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR88_RS12410 and ABZR88_RS12415 are separated by 112 nucleotidesABZR88_RS12415 and ABZR88_RS12420 are separated by 146 nucleotidesABZR88_RS12420 and ABZR88_RS12425 overlap by 7 nucleotidesABZR88_RS12425 and ABZR88_RS12430 are separated by 12 nucleotidesABZR88_RS12430 and ABZR88_RS12435 are separated by 388 nucleotides ABZR88_RS12410: ABZR88_RS12410 - hypothetical protein, at 3,060,853 to 3,062,223 _RS12410 ABZR88_RS12415: ABZR88_RS12415 - tRNA-Arg, at 3,062,336 to 3,062,409 _RS12415 ABZR88_RS12420: ABZR88_RS12420 - Arm DNA-binding domain-containing protein, at 3,062,556 to 3,062,711 _RS12420 ABZR88_RS12425: ABZR88_RS12425 - hypothetical protein, at 3,062,705 to 3,062,899 _RS12425 ABZR88_RS12430: ABZR88_RS12430 - DUF4304 domain-containing protein, at 3,062,912 to 3,063,367 _RS12430 ABZR88_RS12435: ABZR88_RS12435 - hypothetical protein, at 3,063,756 to 3,065,255 _RS12435 Position (kb) 3062 3063Strain fitness (log2 ratio) -2 -1 0 1 2at 3061.795 kb on + strand, within ABZR88_RS12410at 3061.990 kb on - strand, within ABZR88_RS12410at 3062.007 kb on + strand, within ABZR88_RS12410at 3062.023 kb on + strand, within ABZR88_RS12410at 3062.032 kb on + strand, within ABZR88_RS12410at 3062.115 kb on - strandat 3062.120 kb on - strandat 3062.303 kb on + strandat 3062.456 kb on + strandat 3062.538 kb on - strandat 3062.555 kb on + strandat 3062.565 kb on + strandat 3062.610 kb on + strand, within ABZR88_RS12420at 3062.660 kb on + strand, within ABZR88_RS12420at 3062.669 kb on - strand, within ABZR88_RS12420at 3062.727 kb on + strand, within ABZR88_RS12425at 3062.765 kb on - strand, within ABZR88_RS12425at 3062.765 kb on - strand, within ABZR88_RS12425at 3062.860 kb on + strand, within ABZR88_RS12425at 3062.861 kb on - strand, within ABZR88_RS12425at 3062.902 kb on - strandat 3063.012 kb on + strand, within ABZR88_RS12430at 3063.174 kb on + strand, within ABZR88_RS12430at 3063.256 kb on - strand, within ABZR88_RS12430at 3063.363 kb on + strandat 3063.456 kb on + strandat 3063.472 kb on + strandat 3063.582 kb on + strandat 3063.718 kb on - strandat 3063.751 kb on - strandat 3063.860 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
remove
3,061,795 + ABZR88_RS12410 0.69 +0.3
3,061,990 - ABZR88_RS12410 0.83 +0.2
3,062,007 + ABZR88_RS12410 0.84 -0.1
3,062,023 + ABZR88_RS12410 0.85 -2.4
3,062,032 + ABZR88_RS12410 0.86 +0.4
3,062,115 - -0.1
3,062,120 - +0.8
3,062,303 + -0.4
3,062,456 + -0.7
3,062,538 - +0.1
3,062,555 + +0.5
3,062,565 + +0.4
3,062,610 + ABZR88_RS12420 0.35 +0.2
3,062,660 + ABZR88_RS12420 0.67 +0.5
3,062,669 - ABZR88_RS12420 0.72 +0.9
3,062,727 + ABZR88_RS12425 0.11 +2.5
3,062,765 - ABZR88_RS12425 0.31 +0.9
3,062,765 - ABZR88_RS12425 0.31 +0.2
3,062,860 + ABZR88_RS12425 0.79 -0.1
3,062,861 - ABZR88_RS12425 0.80 -0.4
3,062,902 - -0.1
3,063,012 + ABZR88_RS12430 0.22 +0.1
3,063,174 + ABZR88_RS12430 0.57 -0.5
3,063,256 - ABZR88_RS12430 0.75 +0.5
3,063,363 + -0.1
3,063,456 + -0.1
3,063,472 + -0.0
3,063,582 + +0.6
3,063,718 - -0.2
3,063,751 - -0.6
3,063,860 + +0.1

Or see this region's nucleotide sequence