Experiment: R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS12410 and ABZR88_RS12415 are separated by 112 nucleotides ABZR88_RS12415 and ABZR88_RS12420 are separated by 146 nucleotides ABZR88_RS12420 and ABZR88_RS12425 overlap by 7 nucleotides ABZR88_RS12425 and ABZR88_RS12430 are separated by 12 nucleotides ABZR88_RS12430 and ABZR88_RS12435 are separated by 388 nucleotides
ABZR88_RS12410: ABZR88_RS12410 - hypothetical protein, at 3,060,853 to 3,062,223
_RS12410
ABZR88_RS12415: ABZR88_RS12415 - tRNA-Arg, at 3,062,336 to 3,062,409
_RS12415
ABZR88_RS12420: ABZR88_RS12420 - Arm DNA-binding domain-containing protein, at 3,062,556 to 3,062,711
_RS12420
ABZR88_RS12425: ABZR88_RS12425 - hypothetical protein, at 3,062,705 to 3,062,899
_RS12425
ABZR88_RS12430: ABZR88_RS12430 - DUF4304 domain-containing protein, at 3,062,912 to 3,063,367
_RS12430
ABZR88_RS12435: ABZR88_RS12435 - hypothetical protein, at 3,063,756 to 3,065,255
_RS12435
Position (kb)
3062
3063 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3061.795 kb on + strand, within ABZR88_RS12410 at 3061.990 kb on - strand, within ABZR88_RS12410 at 3062.007 kb on + strand, within ABZR88_RS12410 at 3062.023 kb on + strand, within ABZR88_RS12410 at 3062.032 kb on + strand, within ABZR88_RS12410 at 3062.115 kb on - strand at 3062.120 kb on - strand at 3062.303 kb on + strand at 3062.456 kb on + strand at 3062.538 kb on - strand at 3062.555 kb on + strand at 3062.565 kb on + strand at 3062.610 kb on + strand, within ABZR88_RS12420 at 3062.660 kb on + strand, within ABZR88_RS12420 at 3062.669 kb on - strand, within ABZR88_RS12420 at 3062.727 kb on + strand, within ABZR88_RS12425 at 3062.765 kb on - strand, within ABZR88_RS12425 at 3062.765 kb on - strand, within ABZR88_RS12425 at 3062.860 kb on + strand, within ABZR88_RS12425 at 3062.861 kb on - strand, within ABZR88_RS12425 at 3062.902 kb on - strand at 3063.012 kb on + strand, within ABZR88_RS12430 at 3063.174 kb on + strand, within ABZR88_RS12430 at 3063.256 kb on - strand, within ABZR88_RS12430 at 3063.363 kb on + strand at 3063.456 kb on + strand at 3063.472 kb on + strand at 3063.582 kb on + strand at 3063.718 kb on - strand at 3063.751 kb on - strand at 3063.860 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-methoxy-2(3H)-benzoxazolone 0.5 mM remove 3,061,795 + ABZR88_RS12410 0.69 +0.3 3,061,990 - ABZR88_RS12410 0.83 +0.2 3,062,007 + ABZR88_RS12410 0.84 -0.1 3,062,023 + ABZR88_RS12410 0.85 -2.4 3,062,032 + ABZR88_RS12410 0.86 +0.4 3,062,115 - -0.1 3,062,120 - +0.8 3,062,303 + -0.4 3,062,456 + -0.7 3,062,538 - +0.1 3,062,555 + +0.5 3,062,565 + +0.4 3,062,610 + ABZR88_RS12420 0.35 +0.2 3,062,660 + ABZR88_RS12420 0.67 +0.5 3,062,669 - ABZR88_RS12420 0.72 +0.9 3,062,727 + ABZR88_RS12425 0.11 +2.5 3,062,765 - ABZR88_RS12425 0.31 +0.9 3,062,765 - ABZR88_RS12425 0.31 +0.2 3,062,860 + ABZR88_RS12425 0.79 -0.1 3,062,861 - ABZR88_RS12425 0.80 -0.4 3,062,902 - -0.1 3,063,012 + ABZR88_RS12430 0.22 +0.1 3,063,174 + ABZR88_RS12430 0.57 -0.5 3,063,256 - ABZR88_RS12430 0.75 +0.5 3,063,363 + -0.1 3,063,456 + -0.1 3,063,472 + -0.0 3,063,582 + +0.6 3,063,718 - -0.2 3,063,751 - -0.6 3,063,860 + +0.1
Or see this region's nucleotide sequence