Experiment: R2A with Apigenin 50 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR88_RS19610 and ABZR88_RS19615 are separated by 242 nucleotides ABZR88_RS19615 and ABZR88_RS19620 are separated by 104 nucleotides ABZR88_RS19620 and ABZR88_RS19625 are separated by 154 nucleotides
ABZR88_RS19610: ABZR88_RS19610 - heavy metal-binding domain-containing protein, at 4,766,168 to 4,766,416
_RS19610
ABZR88_RS19615: ABZR88_RS19615 - hypothetical protein, at 4,766,659 to 4,767,039
_RS19615
ABZR88_RS19620: ABZR88_RS19620 - hypothetical protein, at 4,767,144 to 4,767,641
_RS19620
ABZR88_RS19625: ABZR88_RS19625 - hypothetical protein, at 4,767,796 to 4,768,806
_RS19625
Position (kb)
4767
4768 Strain fitness (log2 ratio)
-1
0
1 at 4766.227 kb on + strand, within ABZR88_RS19610 at 4766.290 kb on - strand, within ABZR88_RS19610 at 4766.370 kb on - strand, within ABZR88_RS19610 at 4766.429 kb on + strand at 4766.511 kb on - strand at 4766.538 kb on + strand at 4766.597 kb on - strand at 4766.859 kb on + strand, within ABZR88_RS19615 at 4766.860 kb on - strand, within ABZR88_RS19615 at 4766.934 kb on - strand, within ABZR88_RS19615 at 4766.975 kb on - strand, within ABZR88_RS19615 at 4767.000 kb on + strand, within ABZR88_RS19615 at 4767.001 kb on - strand, within ABZR88_RS19615 at 4767.044 kb on + strand at 4767.109 kb on + strand at 4767.211 kb on - strand, within ABZR88_RS19620 at 4767.211 kb on - strand, within ABZR88_RS19620 at 4767.237 kb on + strand, within ABZR88_RS19620 at 4767.371 kb on + strand, within ABZR88_RS19620 at 4767.659 kb on - strand at 4767.695 kb on + strand at 4767.696 kb on - strand at 4767.745 kb on + strand at 4767.793 kb on - strand at 4767.828 kb on - strand at 4767.853 kb on - strand at 4767.854 kb on + strand at 4767.880 kb on - strand at 4768.003 kb on + strand, within ABZR88_RS19625 at 4768.027 kb on + strand, within ABZR88_RS19625 at 4768.028 kb on - strand, within ABZR88_RS19625 at 4768.110 kb on + strand, within ABZR88_RS19625 at 4768.111 kb on - strand, within ABZR88_RS19625 at 4768.111 kb on - strand, within ABZR88_RS19625 at 4768.111 kb on - strand, within ABZR88_RS19625 at 4768.300 kb on - strand, within ABZR88_RS19625 at 4768.300 kb on - strand, within ABZR88_RS19625 at 4768.314 kb on + strand, within ABZR88_RS19625 at 4768.314 kb on + strand, within ABZR88_RS19625 at 4768.331 kb on + strand, within ABZR88_RS19625 at 4768.531 kb on + strand, within ABZR88_RS19625 at 4768.616 kb on + strand, within ABZR88_RS19625
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Apigenin 50 ug/ml remove 4,766,227 + ABZR88_RS19610 0.24 -0.2 4,766,290 - ABZR88_RS19610 0.49 -1.5 4,766,370 - ABZR88_RS19610 0.81 -0.5 4,766,429 + -0.3 4,766,511 - -0.8 4,766,538 + +0.2 4,766,597 - -0.2 4,766,859 + ABZR88_RS19615 0.52 +0.7 4,766,860 - ABZR88_RS19615 0.53 +0.4 4,766,934 - ABZR88_RS19615 0.72 -0.1 4,766,975 - ABZR88_RS19615 0.83 -0.4 4,767,000 + ABZR88_RS19615 0.90 +0.0 4,767,001 - ABZR88_RS19615 0.90 +1.7 4,767,044 + -0.4 4,767,109 + -0.5 4,767,211 - ABZR88_RS19620 0.13 -0.1 4,767,211 - ABZR88_RS19620 0.13 +0.3 4,767,237 + ABZR88_RS19620 0.19 +1.7 4,767,371 + ABZR88_RS19620 0.46 +0.8 4,767,659 - -0.2 4,767,695 + -0.2 4,767,696 - -0.0 4,767,745 + +0.3 4,767,793 - +0.1 4,767,828 - +0.1 4,767,853 - -0.4 4,767,854 + -0.1 4,767,880 - +0.2 4,768,003 + ABZR88_RS19625 0.20 +1.0 4,768,027 + ABZR88_RS19625 0.23 +0.0 4,768,028 - ABZR88_RS19625 0.23 +0.1 4,768,110 + ABZR88_RS19625 0.31 +0.1 4,768,111 - ABZR88_RS19625 0.31 +0.1 4,768,111 - ABZR88_RS19625 0.31 -0.7 4,768,111 - ABZR88_RS19625 0.31 +0.0 4,768,300 - ABZR88_RS19625 0.50 -0.1 4,768,300 - ABZR88_RS19625 0.50 +0.1 4,768,314 + ABZR88_RS19625 0.51 +0.4 4,768,314 + ABZR88_RS19625 0.51 +0.5 4,768,331 + ABZR88_RS19625 0.53 -0.3 4,768,531 + ABZR88_RS19625 0.73 +0.5 4,768,616 + ABZR88_RS19625 0.81 +0.0
Or see this region's nucleotide sequence